Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003488.1 Hibiscus syriacus cultivar Beakdansim tig00007372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43207

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14832--14893
24
2.6
24
84
0
79
14
11
20
53
1.72
16405--16479
10
7.7
10
68
21
52
9
10
21
58
1.59
16411--16475
16
4.1
16
91
0
112
7
10
23
58
1.57
20489--20556
34
2.0
34
97
0
127
25
8
30
35
1.86
21177--21262
16
5.4
16
70
5
66
44
25
15
15
1.85
21179--21261
32
2.6
32
86
0
121
45
25
15
13
1.82
21642--21684
19
2.4
17
81
14
50
74
2
4
18
1.10
22110--22199
32
2.8
32
69
15
78
42
24
10
23
1.84
23001--23153
64
2.4
64
89
0
225
19
24
26
28
1.99
23805--23835
12
2.6
12
100
0
62
19
0
12
67
1.22
26855--26894
14
2.9
14
96
0
71
40
7
7
45
1.61
26849--27134
36
8.2
35
71
18
195
41
3
10
44
1.56
26869--26916
22
2.2
22
92
0
78
39
4
8
47
1.53
26978--27064
14
6.3
14
70
26
51
43
0
9
47
1.35
26986--27052
22
3.2
22
81
12
79
41
0
10
47
1.38
27027--27148
14
9.6
14
71
21
90
45
2
9
42
1.50
27040--27112
22
3.2
22
81
11
92
43
1
9
45
1.45
27262--27334
21
3.5
21
76
14
87
53
8
2
35
1.45
27262--27349
23
4.1
21
73
14
72
53
7
4
34
1.51
27267--27349
42
2.0
42
95
0
148
54
8
4
32
1.52
27668--27779
59
1.9
58
87
5
163
41
3
8
47
1.50
27753--27838
24
3.6
23
86
9
118
47
3
5
43
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27797--27858
11
5.5
11
81
9
72
48
1
4
45
1.33
27821--27864
21
2.0
22
82
4
54
52
0
4
43
1.22
27924--28035
38
3.0
37
75
11
113
43
3
11
41
1.58
27933--28068
27
5.5
24
69
20
84
45
2
9
41
1.52
30531--30594
33
2.0
32
84
3
83
35
32
18
12
1.89
36575--36618
22
2.0
22
82
4
54
47
2
15
34
1.58
37975--38020
22
2.0
23
91
4
76
41
8
2
47
1.46

Tables:   1

The End!