genome.fa.s3489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003489.1 Hibiscus syriacus cultivar Beakdansim tig00007383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101184

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7005--7082	19	4.1	19	77	14	88	26	29	25	17	1.98
7004--7082	29	2.8	28	81	9	88	26	29	26	17	1.98
37767--37835	31	2.2	31	84	0	84	37	13	14	34	1.85
43753--43799	20	2.4	19	89	10	76	55	8	19	17	1.67
43541--44009	181	2.6	182	89	1	683	43	13	17	26	1.86
43925--43971	20	2.3	20	82	7	51	57	6	12	23	1.58
46147--46211	21	3.1	21	93	0	103	41	10	30	16	1.83
46245--46310	33	2.0	33	88	5	98	28	0	46	24	1.52
48108--48156	19	2.6	19	96	0	89	32	2	10	55	1.45
48275--49184	200	4.7	200	84	9	1286	37	15	17	30	1.90
48511--49079	179	3.1	179	90	6	811	36	14	17	31	1.91
48690--49213	198	2.6	199	93	1	892	37	14	16	30	1.90
50698--50791	6	15.7	6	82	0	80	38	7	32	21	1.81
50698--50763	18	3.7	18	83	0	96	39	9	33	18	1.82
50698--50788	12	7.8	12	81	7	98	38	7	32	20	1.81
50715--50792	3	26.0	3	76	0	75	37	6	33	23	1.80
50698--50779	36	2.3	36	91	0	128	39	8	32	19	1.82
51956--51990	17	2.1	17	94	0	61	22	8	17	51	1.72
52011--52612	183	3.2	183	92	3	979	34	15	16	33	1.90
52514--52553	14	2.8	14	96	3	71	42	15	15	27	1.86
55063--55122	25	2.4	25	100	0	120	38	10	13	38	1.78
55476--55548	23	3.2	23	88	0	110	34	5	20	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55476--55573	46	2.1	45	81	7	108	33	7	17	41	1.77
55965--56037	23	3.2	23	82	0	92	36	5	17	39	1.73
56452--56524	23	3.2	23	88	0	110	34	5	20	39	1.76
56452--56549	46	2.1	45	81	7	108	33	7	17	41	1.77
55122--56926	489	3.7	489	98	0	3479	40	7	10	40	1.68
56879--56923	22	2.0	22	83	8	56	42	8	8	40	1.67
62952--62994	21	2.0	21	90	0	68	23	9	16	51	1.73
63171--63205	2	18.0	2	94	5	63	48	0	0	51	1.00
66218--66409	84	2.3	83	77	8	201	39	9	14	36	1.79
71039--71099	28	2.2	28	97	2	115	42	3	14	39	1.62
72029--72084	2	28.0	2	96	0	103	50	1	0	48	1.11
72745--72836	45	2.0	45	97	0	175	59	8	14	17	1.59
73500--73807	53	5.8	53	86	3	386	23	26	19	30	1.98
73498--73807	107	2.9	106	86	3	408	23	26	19	30	1.98
74202--74416	42	4.9	42	70	13	164	30	22	19	28	1.98
74261--74285	13	1.9	13	100	0	50	24	20	24	32	1.98
74666--74729	22	3.0	21	68	17	60	32	25	17	25	1.96
74666--74748	42	2.0	42	90	0	130	32	24	18	25	1.97
83821--83901	21	3.8	21	95	1	126	32	23	25	18	1.97
83936--83980	22	2.0	22	82	4	54	35	31	22	11	1.89
89853--89920	22	3.0	23	82	4	84	20	26	25	27	1.99
89949--89982	17	2.1	17	88	5	52	32	23	5	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92623--92665	17	2.6	16	78	7	50	34	0	25	39	1.56
93551--93611	21	2.9	21	90	2	95	31	24	26	18	1.97
94978--95179	103	2.0	103	94	0	359	27	11	24	36	1.90
95199--95266	23	3.0	23	88	0	91	20	26	26	26	1.99
100014--100065	22	2.4	22	87	6	70	57	1	0	40	1.10

Tables:   1

The End!