genome.fa.s349.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000349.1 Hibiscus syriacus cultivar Beakdansim tig00000643_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88862

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826--857	6	5.7	6	85	14	50	34	0	65	0	0.93
826--856	16	1.9	16	100	0	62	32	0	67	0	0.91
13350--13403	26	2.1	26	100	0	108	22	14	22	40	1.90
16912--17106	46	4.3	46	89	2	288	34	21	5	38	1.77
16933--17110	90	2.0	92	92	2	297	34	20	6	38	1.78
17205--17321	61	1.9	61	82	6	148	32	28	15	23	1.95
21243--21289	21	2.2	21	88	0	67	29	25	23	21	1.99
21298--21385	21	4.2	21	84	5	115	23	20	26	29	1.99
21511--21552	6	7.5	6	92	7	63	28	54	16	0	1.42
21515--21555	5	7.6	5	91	8	55	26	53	19	0	1.45
21515--21555	16	2.5	16	96	4	73	26	53	19	0	1.45
21515--21552	11	3.5	11	89	10	60	26	55	18	0	1.43
22162--22223	21	3.0	20	80	13	72	33	22	22	20	1.97
22759--22801	2	21.5	2	80	0	50	41	2	6	48	1.43
22779--22813	4	8.8	4	93	0	52	31	0	17	51	1.45
22771--22819	20	2.5	20	93	0	80	34	2	12	51	1.51
31175--31215	6	6.8	6	97	0	64	21	51	0	26	1.48
31380--31405	2	13.0	2	100	0	52	0	50	0	50	1.00
31997--32030	2	17.0	2	100	0	68	0	50	0	50	1.00
42015--42075	31	2.0	31	93	0	104	39	6	8	45	1.60
42532--42584	19	2.7	19	76	21	56	64	1	0	33	1.05
42801--42888	44	2.2	39	88	12	124	20	21	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42857--43102	42	5.9	42	92	0	415	19	18	25	36	1.94
43194--43220	6	4.5	6	100	0	54	33	51	14	0	1.43
43866--43909	6	7.5	6	92	2	72	2	15	52	29	1.55
44002--44303	42	7.3	41	82	9	257	37	23	17	21	1.94
44003--44110	37	2.8	37	84	7	135	37	22	17	23	1.94
44006--44073	21	3.2	21	72	15	68	36	22	19	22	1.95
44105--44304	21	9.5	21	74	14	139	37	24	17	20	1.94
44006--44303	105	2.9	105	90	2	480	37	23	17	21	1.94
44085--44282	63	3.1	62	89	5	267	38	22	17	20	1.93
44148--44306	63	2.5	62	91	4	239	36	24	18	20	1.95
44476--44610	12	11.2	12	70	21	88	58	0	0	40	1.03
44501--44573	23	3.0	24	83	15	87	54	0	0	45	0.99
44474--44609	63	2.2	63	90	5	213	58	0	0	40	1.03
45514--45539	3	8.7	3	100	0	52	34	0	0	65	0.93
46348--46421	31	2.4	30	79	4	85	27	32	25	14	1.95
46300--46421	62	2.0	63	82	8	151	25	29	27	17	1.97
47908--47942	18	1.9	18	88	0	52	28	17	0	54	1.43
49222--49278	8	7.5	8	74	22	52	21	26	36	15	1.93
49222--49278	15	3.8	15	84	9	64	21	26	36	15	1.93
49239--49327	13	6.3	13	74	14	61	19	20	42	17	1.89
49261--49298	18	2.1	18	95	0	67	10	21	50	18	1.76
49254--49313	31	1.9	31	86	6	86	16	18	45	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51371--51444	31	2.4	30	79	4	85	27	32	25	14	1.95
52933--52967	18	1.9	18	88	0	52	28	17	0	54	1.43
54246--54302	8	7.5	8	74	22	52	21	26	36	15	1.93
54246--54302	15	3.8	15	84	9	64	21	26	36	15	1.93
54263--54351	13	6.3	13	74	14	61	19	20	42	17	1.89
54285--54322	18	2.1	18	95	0	67	10	21	50	18	1.76
54278--54337	31	1.9	31	86	6	86	16	18	45	20	1.86
56800--56864	31	2.1	30	83	8	78	43	4	21	30	1.73
56839--56878	21	1.9	21	94	0	71	50	2	17	30	1.59
59002--59043	19	2.1	19	86	8	57	47	0	19	33	1.49
63201--63243	17	2.5	18	77	11	54	23	0	6	69	1.12
63209--63244	16	2.2	16	90	9	56	25	0	8	66	1.19
63639--63713	21	3.6	21	75	12	82	14	22	26	36	1.93
63635--63716	41	2.0	42	95	2	148	14	21	24	39	1.91
63642--63735	41	2.3	40	85	7	118	17	19	24	39	1.92
63812--63881	6	12.5	6	98	1	105	28	54	17	0	1.43
64360--64421	5	12.6	5	98	1	117	0	40	20	38	1.53
64418--64526	6	18.2	6	100	0	218	0	16	49	33	1.46
64621--64781	20	7.9	20	76	6	162	39	24	21	14	1.90
64627--64806	41	4.4	41	91	2	290	38	25	20	16	1.92
64626--64803	20	8.7	21	71	6	123	38	25	20	15	1.92
64626--64810	21	9.0	21	73	6	155	38	25	20	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64871--64961	21	4.3	21	77	5	103	34	30	16	18	1.93
64846--64945	42	2.4	42	98	1	193	37	30	19	14	1.90
65481--65520	20	2.0	20	100	0	80	30	15	20	35	1.93
68961--68987	2	13.5	2	100	0	54	51	0	0	48	1.00
69035--69089	17	3.1	18	74	12	60	69	1	0	29	0.99
70221--70353	60	2.2	60	81	9	148	31	15	15	37	1.89
81981--82030	26	2.0	25	92	4	82	30	12	18	40	1.86

Tables:   1

The End!