genome.fa.s3490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003490.1 Hibiscus syriacus cultivar Beakdansim tig00007384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66191

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3102--3581	61	8.0	61	83	7	532	28	20	15	35	1.93
3102--3585	183	2.7	179	82	4	589	28	20	15	35	1.94
3764--4292	36	14.7	36	86	3	735	35	20	23	19	1.95
4495--4538	3	14.7	3	86	9	63	34	0	0	65	0.93
4495--4538	23	2.0	22	90	4	70	34	0	0	65	0.93
5665--5722	20	2.6	22	86	10	75	31	18	22	27	1.97
13468--13507	21	1.9	21	85	10	55	35	10	2	52	1.48
15453--15658	65	3.2	63	80	12	206	26	18	23	31	1.98
17036--17081	23	2.0	23	91	0	74	17	23	26	32	1.97
18622--18660	20	1.9	21	89	5	62	30	15	0	53	1.42
18997--19108	31	3.8	30	77	13	99	37	9	0	52	1.35
19093--19172	19	4.3	18	73	9	70	43	3	2	50	1.33
19277--19357	31	2.6	30	79	9	83	28	4	3	62	1.33
22422--22446	2	12.5	2	100	0	50	0	0	48	52	1.00
22525--22585	2	30.5	2	100	0	122	50	0	0	49	1.00
27180--27228	15	3.4	14	83	5	55	30	22	18	28	1.97
27253--27300	16	3.0	16	81	0	60	18	14	31	35	1.91
38401--38472	7	9.3	7	82	14	72	79	0	16	4	0.89
38401--38476	6	12.5	6	77	10	57	78	0	17	3	0.89
38403--38476	17	4.4	17	78	14	91	78	0	17	4	0.90
45496--45591	27	3.6	26	81	2	93	58	1	7	33	1.33
45488--45615	54	2.2	59	80	12	142	54	0	6	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47608--47644	2	18.5	2	100	0	74	48	0	0	51	1.00
51339--51396	17	3.4	17	80	4	62	39	8	13	37	1.76
56090--56144	18	3.1	18	91	0	92	20	47	20	12	1.82
56149--56355	29	7.2	29	83	6	233	33	1	14	49	1.55
63500--63679	29	6.4	28	74	10	131	34	2	15	47	1.59
63500--63564	28	2.3	29	86	2	87	30	3	16	49	1.61
63564--63615	25	2.2	24	82	6	61	34	0	7	57	1.27
65656--65686	16	1.9	16	93	0	53	67	0	16	16	1.23
65702--65813	4	27.2	4	72	20	54	67	1	2	27	1.14
65749--65810	19	3.6	18	81	16	69	62	3	0	33	1.11

Tables:   1

The End!