Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003491.1 Hibiscus syriacus cultivar Beakdansim tig00007387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 310206
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 2--6312 Score: 9049
Period size: 7 Copynumber: 918.4 Consensus size: 7
1 A
*
2 AACCCTA
1 AACCCTG
*
9 AACCCTA
1 AACCCTG
*
16 AACCCTA
1 AACCCTG
*
23 AACCCTA
1 AACCCTG
*
30 AACCCTA
1 AACCCTG
37 AACCCT-
1 AACCCTG
*
43 AACCCTA
1 AACCCTG
*
50 AACCCTA
1 AACCCTG
*
57 AACCCTA
1 AACCCTG
*
64 AACCCGTA
1 AACCC-TG
*
72 AACCCTA
1 AACCCTG
*
79 AACCCTA
1 AACCCTG
86 AACCCT-
1 AACCCTG
*
92 AACCCTA
1 AACCCTG
*
99 AACCCTA
1 AACCCTG
*
106 AACCCTTA
1 AACCC-TG
114 AACCCT-
1 AACCCTG
120 AA-CCT-
1 AACCCTG
*
125 AACCCTA
1 AACCCTG
132 AACCCT-
1 AACCCTG
*
138 AAACC--
1 AACCCTG
* *
143 AAACCTA
1 AACCCTG
*
150 AACCCTA
1 AACCCTG
157 AACCCT-
1 AACCCTG
*
163 AACCCTA
1 AACCCTG
170 AACCCT-
1 AACCCTG
*
176 AACCCTA
1 AACCCTG
*
183 AACCCTA
1 AACCCTG
*
190 AACCCTA
1 AACCCTG
*
197 AACCCTA
1 AACCCTG
*
204 AACCCTA
1 AACCCTG
*
211 AACCCTA
1 AACCCTG
*
218 AACCCTA
1 AACCCTG
*
225 AACCCTA
1 AACCCTG
*
232 AACCCTA
1 AACCCTG
*
239 AACCCTA
1 AACCCTG
*
246 AACCCTA
1 AACCCTG
253 AACCC-G
1 AACCCTG
*
259 AAAACCCTA
1 --AACCCTG
*
268 AACCCTA
1 AACCCTG
*
275 AACCCTA
1 AACCCTG
*
282 AACCCTA
1 AACCCTG
*
289 AACCCTA
1 AACCCTG
296 AACCC-G
1 AACCCTG
*
302 AAAACCCTA
1 --AACCCTG
*
311 AACCCTA
1 AACCCTG
*
318 AACCCTA
1 AACCCTG
325 AACCCT-
1 AACCCTG
*
331 AACCCTA
1 AACCCTG
*
338 AACCCTA
1 AACCCTG
345 AACCCT-
1 AACCCTG
*
351 AACCCTA
1 AACCCTG
*
358 AACCCTA
1 AACCCTG
365 AACCCT-
1 AACCCTG
* *
371 AAACCTA
1 AACCCTG
*
378 AACCCTA
1 AACCCTG
385 AACCC--
1 AACCCTG
*
390 -ACCCTA
1 AACCCTG
*
396 AACCCTA
1 AACCCTG
*
403 AACCCTAA
1 AACCCT-G
*
411 AACCCTA
1 AACCCTG
418 AACCCT-
1 AACCCTG
*
424 AACCCTA
1 AACCCTG
*
431 AACCCTA
1 AACCCTG
*
438 AACCCTA
1 AACCCTG
*
445 AACCCTA
1 AACCCTG
*
452 AACCCTA
1 AACCCTG
*
459 AACCCTA
1 AACCCTG
*
466 AACCCTA
1 AACCCTG
*
473 AACCCTA
1 AACCCTG
*
480 AACCCTA
1 AACCCTG
*
487 AACCCTA
1 AACCCTG
494 AACCCT-
1 AACCCTG
* *
500 AAACCTA
1 AACCCTG
*
507 AACCCTA
1 AACCCTG
*
514 AACCCTA
1 AACCCTG
*
521 AACCCTA
1 AACCCTG
528 AACCCT-
1 AACCCTG
*
534 AACCCTA
1 AACCCTG
*
541 AACCCTA
1 AACCCTG
548 AACCC-G
1 AACCCTG
*
554 AAAACCCTA
1 --AACCCTG
*
563 AACCCTA
1 AACCCTG
570 AACCC--
1 AACCCTG
* *
575 AAACCTA
1 AACCCTG
*
582 AACCCTA
1 AACCCTG
*
589 AACCCTA
1 AACCCTG
*
596 AACCCTA
1 AACCCTG
*
603 AACCCTA
1 AACCCTG
*
610 AACCCTA
1 AACCCTG
*
617 AACCCTA
1 AACCCTG
*
624 AACCCTA
1 AACCCTG
*
631 AACCCCTA
1 AA-CCCTG
*
639 AACCCTA
1 AACCCTG
*
646 AACCCTA
1 AACCCTG
*
653 AACCCTA
1 AACCCTG
*
660 AACCCTA
1 AACCCTG
*
667 AACCCTA
1 AACCCTG
674 AACCCT-
1 AACCCTG
*
680 AACCCTA
1 AACCCTG
687 AACCCT-
1 AACCCTG
*
693 AAACCT-
1 AACCCTG
*
699 AACCCTA
1 AACCCTG
*
706 AACCCTA
1 AACCCTG
*
713 AACCCTA
1 AACCCTG
*
720 AACCCTA
1 AACCCTG
727 AACCCT-
1 AACCCTG
*
733 AACCCTA
1 AACCCTG
*
740 AACCCTA
1 AACCCTG
*
747 AACCC-A
1 AACCCTG
*
753 AACCCTA
1 AACCCTG
*
760 AACCCTA
1 AACCCTG
*
767 AACCC-A
1 AACCCTG
*
773 AACCCTA
1 AACCCTG
*
780 AACCCTA
1 AACCCTG
787 AACCCT-
1 AACCCTG
*
793 AA-CC-A
1 AACCCTG
*
798 AACCCTA
1 AACCCTG
*
805 AACCCTA
1 AACCCTG
*
812 AACCCTA
1 AACCCTG
*
819 AACCCTA
1 AACCCTG
*
826 AACCCTA
1 AACCCTG
833 AACCCT-
1 AACCCTG
839 AACCCT-
1 AACCCTG
*
845 AACCCTA
1 AACCCTG
*
852 AACCCTA
1 AACCCTG
*
859 AACCCTA
1 AACCCTG
*
866 AACCCTA
1 AACCCTG
873 AACCCT-
1 AACCCTG
*
879 AACCCTA
1 AACCCTG
*
886 AACCCTA
1 AACCCTG
*
893 AACCCTA
1 AACCCTG
*
900 AACCCTA
1 AACCCTG
*
907 AACCCTA
1 AACCCTG
*
914 AACCCTA
1 AACCCTG
*
921 AACCCTA
1 AACCCTG
*
928 AACCCTA
1 AACCCTG
935 AACCCT-
1 AACCCTG
*
941 AACCCTA
1 AACCCTG
*
948 AACCCTA
1 AACCCTG
*
955 AACCCTA
1 AACCCTG
*
962 AACCCTA
1 AACCCTG
*
969 AACCC-A
1 AACCCTG
*
975 AACCCTA
1 AACCCTG
982 AACCCT-
1 AACCCTG
*
988 AACCCTAAAA
1 AACCCT---G
*
998 AACCCTA
1 AACCCTG
*
1005 AACCCTA
1 AACCCTG
*
1012 AACCCTA
1 AACCCTG
*
1019 AACCCTA
1 AACCCTG
*
1026 AACCCTA
1 AACCCTG
1033 AACCCT-
1 AACCCTG
* *
1039 AAACCTA
1 AACCCTG
*
1046 AACCCTA
1 AACCCTG
*
1053 AACCCTA
1 AACCCTG
*
1060 AACCCTA
1 AACCCTG
*
1067 AACCCTA
1 AACCCTG
*
1074 AACCCTA
1 AACCCTG
*
1081 AACCCTA
1 AACCCTG
*
1088 AACCCTA
1 AACCCTG
1095 AACCCT-
1 AACCCTG
*
1101 AACCCTA
1 AACCCTG
*
1108 AACCCTA
1 AACCCTG
1115 AACCCT-
1 AACCCTG
1121 AACCC-G
1 AACCCTG
*
1127 AAACCCTA
1 -AACCCTG
*
1135 AACCCTA
1 AACCCTG
*
1142 AACCCTA
1 AACCCTG
*
1149 AACCCTAA
1 AACCCT-G
1157 AACCCT-
1 AACCCTG
1163 AA-CC--
1 AACCCTG
*
1167 AACCCTA
1 AACCCTG
*
1174 AACCCTA
1 AACCCTG
*
1181 AACCCTA
1 AACCCTG
1188 AACCCT-
1 AACCCTG
*
1194 AACCCTA
1 AACCCTG
*
1201 AACCCTAA
1 AACCCT-G
*
1209 AACCCTA
1 AACCCTG
*
1216 AACCCTA
1 AACCCTG
1223 AACCCT-
1 AACCCTG
*
1229 AAACC--
1 AACCCTG
* *
1234 AAACCTA
1 AACCCTG
**
1241 AACCCAA
1 AACCCTG
*
1248 AACCCTA
1 AACCCTG
*
1255 AACCCTA
1 AACCCTG
*
1262 AACCCTA
1 AACCCTG
*
1269 AACCCTA
1 AACCCTG
*
1276 AACCCTA
1 AACCCTG
*
1283 AACCCTA
1 AACCCTG
1290 AACCC--
1 AACCCTG
*
1295 AACCCTA
1 AACCCTG
*
1302 AACCCTA
1 AACCCTG
*
1309 AACCCTA
1 AACCCTG
*
1316 AACCCTA
1 AACCCTG
*
1323 AACCCTA
1 AACCCTG
*
1330 AACCCTA
1 AACCCTG
*
1337 AACCCTAAA
1 AACCCT--G
*
1346 AACCCTA
1 AACCCTG
*
1353 AACCCTA
1 AACCCTG
*
1360 AACCCTA
1 AACCCTG
*
1367 AACCCTA
1 AACCCTG
*
1374 AACCCTA
1 AACCCTG
*
1381 AACCCTA
1 AACCCTG
1388 AACCCT-
1 AACCCTG
* *
1394 AAACCTA
1 AACCCTG
*
1401 AACCCTA
1 AACCCTG
*
1408 AACCCTA
1 AACCCTG
*
1415 AACCCTA
1 AACCCTG
1422 AACCCT-
1 AACCCTG
*
1428 AACCCTA
1 AACCCTG
*
1435 AACCCTAA
1 AACCCT-G
*
1443 AACCCTA
1 AACCCTG
*
1450 AACCC-A
1 AACCCTG
*
1456 AACCCTAA
1 AACCCT-G
*
1464 AACCCTA
1 AACCCTG
*
1471 AACCCTA
1 AACCCTG
*
1478 AACCCTA
1 AACCCTG
*
1485 AACCCTA
1 AACCCTG
*
1492 AACCCTA
1 AACCCTG
1499 AACCCT-
1 AACCCTG
*
1505 AACCCTA
1 AACCCTG
*
1512 AACCCTA
1 AACCCTG
*
1519 AACCCTA
1 AACCCTG
*
1526 AACCCTA
1 AACCCTG
*
1533 AACCCTA
1 AACCCTG
1540 AACCCT-
1 AACCCTG
*
1546 AACCCTA
1 AACCCTG
*
1553 AACCCTA
1 AACCCTG
*
1560 AACCCTA
1 AACCCTG
*
1567 AACCCTA
1 AACCCTG
*
1574 AACCCTA
1 AACCCTG
*
1581 AACCCTA
1 AACCCTG
*
1588 AACCCTA
1 AACCCTG
*
1595 AACCCTA
1 AACCCTG
*
1602 AACCCTA
1 AACCCTG
1609 AACCCT-
1 AACCCTG
*
1615 AACCCTA
1 AACCCTG
1622 AACCCT-
1 AACCCTG
*
1628 AA-CCTA
1 AACCCTG
*
1634 AACCCTA
1 AACCCTG
1641 AACCCT-
1 AACCCTG
1647 AACCCT-
1 AACCCTG
*
1653 AACCCTA
1 AACCCTG
1660 AACCCTG
1 AACCCTG
*
1667 AACCCTA
1 AACCCTG
1674 AACCCT-
1 AACCCTG
1680 AACCCT-
1 AACCCTG
1686 AACCC-G
1 AACCCTG
1692 AAACCCT-
1 -AACCCTG
*
1699 AACCCTA
1 AACCCTG
*
1706 AACCCTA
1 AACCCTG
*
1713 AACCCTA
1 AACCCTG
1720 AACCCTG
1 AACCCTG
1727 AACCCTG
1 AACCCTG
1734 AACCCTG
1 AACCCTG
1741 AAACCCTG
1 -AACCCTG
1749 AACCCTG
1 AACCCTG
1756 AAAACCCT-
1 --AACCCTG
1764 AACCCT-
1 AACCCTG
1770 AACCCT-
1 AACCCTG
1776 AACCCTG
1 AACCCTG
1783 AACCCT-
1 AACCCTG
1789 AACCCTG
1 AACCCTG
1796 AACCCTG
1 AACCCTG
1803 AAACCCT-
1 -AACCCTG
1810 AACCCTG
1 AACCCTG
1817 AAACCCT-
1 -AACCCTG
1824 AACCCTG
1 AACCCTG
*
1831 AAACCCTA
1 -AACCCTG
1839 AACCCT-
1 AACCCTG
*
1845 AA-CCTA
1 AACCCTG
*
1851 AACCCTA
1 AACCCTG
1858 AACCCT-
1 AACCCTG
1864 -ACCCTG
1 AACCCTG
*
1870 AACCCTA
1 AACCCTG
1877 AACCCT-
1 AACCCTG
1883 AACCCT-
1 AACCCTG
1889 AACCCTG
1 AACCCTG
1896 AACCCT-
1 AACCCTG
1902 AACCCT-
1 AACCCTG
*
1908 AACCCTA
1 AACCCTG
1915 AACCCT-
1 AACCCTG
1921 AACCCTG
1 AACCCTG
1928 AACCCT-
1 AACCCTG
1934 AACCCT-
1 AACCCTG
*
1940 AACCCTA
1 AACCCTG
1947 AACCCTG
1 AACCCTG
1954 AACCCT-
1 AACCCTG
*
1960 AA-CC-A
1 AACCCTG
1965 AACCCTG
1 AACCCTG
*
1972 AACCCTA
1 AACCCTG
*
1979 AACCCTA
1 AACCCTG
1986 AACCCTG
1 AACCCTG
1993 AAACCCT-
1 -AACCCTG
*
2000 AACCCTA
1 AACCCTG
2007 AACCCT-
1 AACCCTG
2013 AACCCTG
1 AACCCTG
2020 AACCCTG
1 AACCCTG
2027 AACCCT-
1 AACCCTG
2033 AACCC-G
1 AACCCTG
2039 AACCCT-
1 AACCCTG
*
2045 AACCCTA
1 AACCCTG
2052 AACCCT-
1 AACCCTG
*
2058 AA-CCTA
1 AACCCTG
2064 AACCCTG
1 AACCCTG
*
2071 AACCCTA
1 AACCCTG
2078 AACCCT-
1 AACCCTG
2084 AACCCTG
1 AACCCTG
2091 AAACCCTG
1 -AACCCTG
2099 AACCCT-
1 AACCCTG
2105 AACCCTG
1 AACCCTG
2112 AAACCCTG
1 -AACCCTG
2120 AACCCT-
1 AACCCTG
2126 AACCCTG
1 AACCCTG
2133 AACCCTG
1 AACCCTG
2140 AACCCTG
1 AACCCTG
2147 AACCCCTG
1 AA-CCCTG
2155 AA-CCTG
1 AACCCTG
2161 AACCCTG
1 AACCCTG
2168 AACCCTG
1 AACCCTG
2175 AACCCTG
1 AACCCTG
2182 AACCCTG
1 AACCCTG
2189 AACCCTGTG
1 AACCC--TG
2198 AACCCT-
1 AACCCTG
2204 AACCCTG
1 AACCCTG
2211 AAACCCTG
1 -AACCCTG
2219 AACCCTG
1 AACCCTG
2226 AACCCTG
1 AACCCTG
2233 AACCCTG
1 AACCCTG
2240 AACCCTG
1 AACCCTG
*
2247 AAACCTG
1 AACCCTG
2254 AACCCTG
1 AACCCTG
2261 AACCCTG
1 AACCCTG
2268 AACCCTG
1 AACCCTG
2275 AACCCTG
1 AACCCTG
2282 AACCCTG
1 AACCCTG
2289 AACCCTG
1 AACCCTG
2296 AACCCTG
1 AACCCTG
2303 AACCCTG
1 AACCCTG
2310 AACCCTG
1 AACCCTG
2317 AACCCTG
1 AACCCTG
2324 AACCCTG
1 AACCCTG
2331 AACCCTG
1 AACCCTG
2338 AACCCTG
1 AACCCTG
*
2345 AA--ATG
1 AACCCTG
2350 AACCCTG
1 AACCCTG
2357 AACCCTG
1 AACCCTG
2364 AACCCTG
1 AACCCTG
2371 AACCCTG
1 AACCCTG
2378 -ACCCTG
1 AACCCTG
2384 AACCCTG
1 AACCCTG
2391 AACCCTG
1 AACCCTG
2398 AACCC-G
1 AACCCTG
2404 AACCCT-
1 AACCCTG
2410 AACCCTG
1 AACCCTG
*
2417 AAACCTG
1 AACCCTG
2424 AACCCTG
1 AACCCTG
2431 AACCCTG
1 AACCCTG
2438 AACCCTG
1 AACCCTG
2445 AACACCCTG
1 -A-ACCCTG
2454 AACCCTG
1 AACCCTG
2461 AACCCTG
1 AACCCTG
2468 AACCCT-
1 AACCCTG
2474 AA-CC-G
1 AACCCTG
2479 AACCCTG
1 AACCCTG
2486 AACCCTG
1 AACCCTG
2493 AACCCTG
1 AACCCTG
2500 AA-CCTG
1 AACCCTG
2506 -ACCCTG
1 AACCCTG
2512 AACCCTG
1 AACCCTG
2519 AACCCTG
1 AACCCTG
2526 AACCCTG
1 AACCCTG
2533 AACCCTG
1 AACCCTG
2540 AACCCTG
1 AACCCTG
2547 AACCCTG
1 AACCCTG
2554 AACCCTG
1 AACCCTG
2561 AACCCTG
1 AACCCTG
2568 AA-CCTG
1 AACCCTG
2574 AACCCTG
1 AACCCTG
2581 AA-CCTG
1 AACCCTG
2587 AACCCTG
1 AACCCTG
2594 AACCCTG
1 AACCCTG
2601 AACCCTG
1 AACCCTG
2608 AACCCTG
1 AACCCTG
2615 AA-CCTG
1 AACCCTG
2621 AACCCTG
1 AACCCTG
2628 AACCCTG
1 AACCCTG
2635 AACCCTG
1 AACCCTG
2642 AACCCTG
1 AACCCTG
2649 AACCCTG
1 AACCCTG
2656 AACCCTG
1 AACCCTG
2663 AACCCTG
1 AACCCTG
2670 AACCCTG
1 AACCCTG
2677 AACCCTG
1 AACCCTG
2684 AACCCTG
1 AACCCTG
2691 AACCCTG
1 AACCCTG
2698 AACCCTG
1 AACCCTG
2705 AACCCTG
1 AACCCTG
2712 AACCCTG
1 AACCCTG
2719 AACCCTG
1 AACCCTG
2726 AACCCTG
1 AACCCTG
2733 AACCCTG
1 AACCCTG
2740 AACCCTG
1 AACCCTG
2747 -ACCCTG
1 AACCCTG
2753 AACCCTG
1 AACCCTG
2760 AACCCTG
1 AACCCTG
2767 AACCCTG
1 AACCCTG
2774 AACCCTG
1 AACCCTG
2781 AACCCTG
1 AACCCTG
2788 AACCCTG
1 AACCCTG
2795 AACCCTG
1 AACCCTG
2802 AACCCTG
1 AACCCTG
2809 AACCCTG
1 AACCCTG
2816 AACCCTG
1 AACCCTG
2823 AACCCTG
1 AACCCTG
2830 AACCCTG
1 AACCCTG
2837 AACCCTG
1 AACCCTG
2844 AACCCTG
1 AACCCTG
2851 AACCCTG
1 AACCCTG
2858 AAACCCTG
1 -AACCCTG
2866 AACCCTG
1 AACCCTG
2873 AACCCTG
1 AACCCTG
2880 AACCCTG
1 AACCCTG
2887 AACCCTG
1 AACCCTG
2894 AACCCTG
1 AACCCTG
2901 AACCC-G
1 AACCCTG
2907 AACCCTG
1 AACCCTG
2914 AACCCTG
1 AACCCTG
2921 AACCCTG
1 AACCCTG
2928 AACCCTG
1 AACCCTG
2935 AACCCTG
1 AACCCTG
2942 AACCCTG
1 AACCCTG
2949 AACCCTG
1 AACCCTG
2956 AACCCTG
1 AACCCTG
2963 AACCCTG
1 AACCCTG
2970 AACCCTG
1 AACCCTG
2977 AACCCTG
1 AACCCTG
2984 AACCCTG
1 AACCCTG
2991 AACCCTG
1 AACCCTG
2998 AACCCTG
1 AACCCTG
3005 AACCCTG
1 AACCCTG
3012 AACCCTG
1 AACCCTG
3019 AA-CCTG
1 AACCCTG
3025 AACCCTG
1 AACCCTG
3032 AACCCTG
1 AACCCTG
3039 AAACCCTG
1 -AACCCTG
3047 AACCCTG
1 AACCCTG
3054 AACCC-G
1 AACCCTG
3060 AACCCTG
1 AACCCTG
3067 AAACCCTG
1 -AACCCTG
3075 AACCCTG
1 AACCCTG
3082 AACCCTG
1 AACCCTG
3089 AACCCTG
1 AACCCTG
3096 AACCCTG
1 AACCCTG
3103 AA-CCTG
1 AACCCTG
3109 AACCCTG
1 AACCCTG
3116 AACCCTG
1 AACCCTG
3123 AACCCTG
1 AACCCTG
3130 AACCCTG
1 AACCCTG
3137 AA-CCTG
1 AACCCTG
3143 AACCCTG
1 AACCCTG
3150 AACCCTG
1 AACCCTG
3157 AACCCTG
1 AACCCTG
3164 AACCCTG
1 AACCCTG
3171 AACCCTG
1 AACCCTG
3178 AACCCTG
1 AACCCTG
3185 AACCCTG
1 AACCCTG
3192 AACCCTG
1 AACCCTG
3199 -ACCCTG
1 AACCCTG
3205 AACCCTG
1 AACCCTG
3212 AACCCTG
1 AACCCTG
3219 AACCCTG
1 AACCCTG
3226 AA-CCTG
1 AACCCTG
3232 AACCCTG
1 AACCCTG
3239 AACCCTG
1 AACCCTG
3246 AACCCTG
1 AACCCTG
3253 AACCCTG
1 AACCCTG
3260 AACCCTG
1 AACCCTG
3267 AACCCTG
1 AACCCTG
3274 AA-CCTG
1 AACCCTG
3280 AACCCTG
1 AACCCTG
3287 AACCCTG
1 AACCCTG
3294 AACCCTG
1 AACCCTG
3301 AACCCTG
1 AACCCTG
3308 AACCCTG
1 AACCCTG
3315 AACCCCTG
1 AA-CCCTG
3323 AACCCTG
1 AACCCTG
3330 AACCCTG
1 AACCCTG
3337 AACCCTG
1 AACCCTG
3344 AACCCTG
1 AACCCTG
3351 AACCCTG
1 AACCCTG
3358 AACCCTG
1 AACCCTG
3365 -ACCCTG
1 AACCCTG
3371 AACCCTG
1 AACCCTG
3378 AACCCTG
1 AACCCTG
3385 AACCCTG
1 AACCCTG
3392 AACCCTG
1 AACCCTG
3399 AACCCTG
1 AACCCTG
3406 AACCCTG
1 AACCCTG
3413 AACCCTG
1 AACCCTG
3420 AACCCTG
1 AACCCTG
3427 AA-CCTG
1 AACCCTG
3433 AACCCTG
1 AACCCTG
3440 AACCCTG
1 AACCCTG
3447 AACCCTG
1 AACCCTG
3454 AACCCTG
1 AACCCTG
3461 AACCCTG
1 AACCCTG
3468 AACCCTG
1 AACCCTG
3475 AACCCTG
1 AACCCTG
3482 AACCCTG
1 AACCCTG
3489 AACCCTG
1 AACCCTG
3496 AACCCTG
1 AACCCTG
3503 AACCCTG
1 AACCCTG
3510 AACCCTG
1 AACCCTG
3517 AACCCTG
1 AACCCTG
3524 AACCCTG
1 AACCCTG
3531 AACCCTG
1 AACCCTG
3538 AACCCTG
1 AACCCTG
3545 AA-CCTG
1 AACCCTG
3551 AACCCTG
1 AACCCTG
3558 AACCCTG
1 AACCCTG
3565 AACCCTG
1 AACCCTG
3572 AACCCTG
1 AACCCTG
3579 AACCCTG
1 AACCCTG
3586 AACCCTG
1 AACCCTG
3593 AACCCTG
1 AACCCTG
3600 AA-CCTG
1 AACCCTG
3606 AACCCTG
1 AACCCTG
3613 AACCCTG
1 AACCCTG
3620 AACCCTG
1 AACCCTG
3627 AACCCTG
1 AACCCTG
3634 AACCCTG
1 AACCCTG
3641 AACCCTG
1 AACCCTG
3648 AACCCTG
1 AACCCTG
3655 AACCCTG
1 AACCCTG
3662 AACCCTG
1 AACCCTG
3669 AACCCTG
1 AACCCTG
3676 AACCCTG
1 AACCCTG
3683 AACCCTG
1 AACCCTG
3690 AACCCTG
1 AACCCTG
3697 AACCCTG
1 AACCCTG
3704 AACCCTG
1 AACCCTG
3711 AA-CCTG
1 AACCCTG
3717 AACCCTG
1 AACCCTG
3724 AACCCTG
1 AACCCTG
3731 AACCCTG
1 AACCCTG
3738 AA-CCTG
1 AACCCTG
3744 AACCCTG
1 AACCCTG
3751 AACCCTG
1 AACCCTG
3758 AACCCTG
1 AACCCTG
3765 AACCCTG
1 AACCCTG
3772 AACCCTG
1 AACCCTG
3779 AACCCTG
1 AACCCTG
3786 AACCCTG
1 AACCCTG
3793 AACCCTG
1 AACCCTG
3800 AAACCCTG
1 -AACCCTG
3808 AACCCTG
1 AACCCTG
3815 AA-CCTG
1 AACCCTG
3821 AACCCTG
1 AACCCTG
3828 AACCCTG
1 AACCCTG
3835 AACCCTG
1 AACCCTG
3842 AACCCTG
1 AACCCTG
3849 AACCCTG
1 AACCCTG
3856 AACCCTG
1 AACCCTG
3863 AACCCTG
1 AACCCTG
3870 AACCCTG
1 AACCCTG
3877 AACCCTG
1 AACCCTG
3884 AACCCTG
1 AACCCTG
3891 AACCCTG
1 AACCCTG
3898 AACCCTG
1 AACCCTG
3905 AACCCTG
1 AACCCTG
3912 AACCCTG
1 AACCCTG
3919 AACCC--
1 AACCCTG
3924 AACCCTG
1 AACCCTG
3931 AACCCTG
1 AACCCTG
3938 AACCCTG
1 AACCCTG
3945 AACCCTG
1 AACCCTG
3952 AACCC-G
1 AACCCTG
3958 AACCCTG
1 AACCCTG
3965 AACCCTG
1 AACCCTG
3972 AACCCTG
1 AACCCTG
3979 AACCCTG
1 AACCCTG
3986 AACCCTG
1 AACCCTG
3993 AACCCTG
1 AACCCTG
4000 AACCCTG
1 AACCCTG
4007 AACCCTG
1 AACCCTG
4014 AACCCTG
1 AACCCTG
4021 AACCCTG
1 AACCCTG
4028 AA-CCTG
1 AACCCTG
4034 AACCCTG
1 AACCCTG
4041 AA-CCTG
1 AACCCTG
4047 AACCCTG
1 AACCCTG
4054 AACCCTG
1 AACCCTG
4061 AACCCTG
1 AACCCTG
4068 AACCCTG
1 AACCCTG
4075 AACCCTG
1 AACCCTG
4082 AACCCTG
1 AACCCTG
4089 AACCCTG
1 AACCCTG
4096 AACCCTG
1 AACCCTG
4103 AACCCTG
1 AACCCTG
4110 AACCCTG
1 AACCCTG
4117 AACCCTG
1 AACCCTG
4124 AACCCTG
1 AACCCTG
4131 AACCCTG
1 AACCCTG
4138 AACCCTG
1 AACCCTG
4145 AACCCTG
1 AACCCTG
4152 AACCCTG
1 AACCCTG
4159 AACCCTG
1 AACCCTG
4166 AACCCTG
1 AACCCTG
4173 AACCCTG
1 AACCCTG
4180 AACCCTG
1 AACCCTG
4187 AACCCTG
1 AACCCTG
4194 AACCCTG
1 AACCCTG
4201 AACCCTG
1 AACCCTG
4208 AACCCTG
1 AACCCTG
4215 AACCCTG
1 AACCCTG
4222 AACCCTG
1 AACCCTG
4229 AACCCTG
1 AACCCTG
4236 AACCCTG
1 AACCCTG
4243 AACCCTG
1 AACCCTG
4250 AACCCTG
1 AACCCTG
4257 AACCCTG
1 AACCCTG
4264 AACCCTG
1 AACCCTG
4271 AACCCTG
1 AACCCTG
4278 AACCCTG
1 AACCCTG
4285 AACCCTG
1 AACCCTG
4292 AACCCTG
1 AACCCTG
4299 AACCCTG
1 AACCCTG
4306 AACCCTG
1 AACCCTG
4313 AA-CCTG
1 AACCCTG
4319 AACCCTG
1 AACCCTG
4326 AACCCTG
1 AACCCTG
4333 AACCCTG
1 AACCCTG
4340 AACCCTG
1 AACCCTG
4347 AACCCTG
1 AACCCTG
4354 AACCCTG
1 AACCCTG
4361 AACCCTG
1 AACCCTG
4368 AACCCTG
1 AACCCTG
4375 AACCCTG
1 AACCCTG
4382 AACCCCTG
1 AA-CCCTG
4390 AACCCTG
1 AACCCTG
4397 AACCCTG
1 AACCCTG
4404 AACCCTG
1 AACCCTG
4411 AACCCTG
1 AACCCTG
4418 AACCCTG
1 AACCCTG
4425 AACCCTG
1 AACCCTG
4432 AACCCTG
1 AACCCTG
4439 AACCCTG
1 AACCCTG
4446 AACCCTG
1 AACCCTG
4453 AACCCTG
1 AACCCTG
4460 AA-CCTG
1 AACCCTG
4466 AACCCTG
1 AACCCTG
4473 AACCCTG
1 AACCCTG
4480 AACCCTG
1 AACCCTG
4487 AACCCTG
1 AACCCTG
4494 AACCCTG
1 AACCCTG
4501 AACCCTG
1 AACCCTG
4508 AACCCTG
1 AACCCTG
4515 AACCCTG
1 AACCCTG
4522 AACCCTG
1 AACCCTG
4529 AACCCTG
1 AACCCTG
4536 -ACCCTG
1 AACCCTG
4542 AACCCTG
1 AACCCTG
4549 AACCCTG
1 AACCCTG
4556 AACCCTG
1 AACCCTG
4563 AACCCTG
1 AACCCTG
4570 AACCCTG
1 AACCCTG
4577 AA-CCTG
1 AACCCTG
4583 AACCCTG
1 AACCCTG
4590 AACCCTG
1 AACCCTG
4597 AACCCTG
1 AACCCTG
4604 AACCCTG
1 AACCCTG
4611 AACCCTG
1 AACCCTG
4618 AA-CCTG
1 AACCCTG
4624 AACCCTG
1 AACCCTG
4631 AACCCTG
1 AACCCTG
4638 AACCCTG
1 AACCCTG
4645 AACCCTG
1 AACCCTG
4652 AACCCTG
1 AACCCTG
4659 AACCCTG
1 AACCCTG
4666 AACCCTG
1 AACCCTG
4673 AACCCTG
1 AACCCTG
4680 AACCCTG
1 AACCCTG
4687 AACCCTG
1 AACCCTG
4694 AACCCTG
1 AACCCTG
4701 AACCCTG
1 AACCCTG
4708 AACCCTG
1 AACCCTG
4715 AACCCTG
1 AACCCTG
4722 AACCCTG
1 AACCCTG
4729 AACCCTG
1 AACCCTG
4736 -ACCCTG
1 AACCCTG
4742 AACCCTG
1 AACCCTG
4749 AACCCTG
1 AACCCTG
4756 AACCCTG
1 AACCCTG
4763 AACCCTG
1 AACCCTG
4770 AACCCTG
1 AACCCTG
4777 AACCCTG
1 AACCCTG
4784 AACCCTG
1 AACCCTG
4791 AACCCTG
1 AACCCTG
4798 AACCCTG
1 AACCCTG
4805 AACCCTG
1 AACCCTG
4812 AACCCTG
1 AACCCTG
4819 AACCCTG
1 AACCCTG
4826 AA-CCTG
1 AACCCTG
4832 AA-CCTG
1 AACCCTG
4838 AACCCTG
1 AACCCTG
4845 AACCCTG
1 AACCCTG
4852 AACCCTG
1 AACCCTG
4859 AACCCTG
1 AACCCTG
4866 AACCCTG
1 AACCCTG
4873 AACCCTG
1 AACCCTG
4880 AA-CCTG
1 AACCCTG
4886 AACCCTG
1 AACCCTG
4893 AACCCTG
1 AACCCTG
4900 AACCCTG
1 AACCCTG
4907 AACCCTG
1 AACCCTG
4914 AACCCTG
1 AACCCTG
4921 AACCCTG
1 AACCCTG
4928 AACCCTG
1 AACCCTG
4935 AACCCTG
1 AACCCTG
4942 AACCCTG
1 AACCCTG
4949 AACCCTG
1 AACCCTG
4956 AA-CCTG
1 AACCCTG
4962 AACCCTG
1 AACCCTG
4969 AACCCTG
1 AACCCTG
4976 AACCCTG
1 AACCCTG
4983 AACCCTG
1 AACCCTG
4990 AACCCTG
1 AACCCTG
4997 AACCCTG
1 AACCCTG
5004 AACCCTG
1 AACCCTG
5011 AACCCTG
1 AACCCTG
5018 AACCCTG
1 AACCCTG
5025 AA-CCTG
1 AACCCTG
5031 AA-CCTG
1 AACCCTG
5037 AACCCTG
1 AACCCTG
5044 AACCCTG
1 AACCCTG
5051 AACCCTG
1 AACCCTG
5058 AACCCTG
1 AACCCTG
5065 AACCCTG
1 AACCCTG
5072 AACCCTG
1 AACCCTG
5079 AACCCTG
1 AACCCTG
5086 AACCCTG
1 AACCCTG
5093 AACCCTG
1 AACCCTG
5100 AACCC-G
1 AACCCTG
5106 AACCCTG
1 AACCCTG
5113 AA-CCTG
1 AACCCTG
5119 AACCCTG
1 AACCCTG
5126 AACCCTG
1 AACCCTG
5133 -ACCCTG
1 AACCCTG
5139 AACCCTG
1 AACCCTG
5146 AACCCTG
1 AACCCTG
5153 AACCCTG
1 AACCCTG
5160 AACCCTG
1 AACCCTG
5167 AA-CCTG
1 AACCCTG
5173 AACCCTG
1 AACCCTG
5180 AACCCTG
1 AACCCTG
5187 AACCCTG
1 AACCCTG
5194 AACCCTG
1 AACCCTG
5201 AACCCTG
1 AACCCTG
5208 AACCCTG
1 AACCCTG
5215 AACCCTG
1 AACCCTG
5222 AACCCTG
1 AACCCTG
5229 AACCCTG
1 AACCCTG
5236 AACCCTG
1 AACCCTG
5243 AACCCTG
1 AACCCTG
5250 AACCCTG
1 AACCCTG
5257 AA-CCTG
1 AACCCTG
5263 AACCCTG
1 AACCCTG
5270 AACCCTG
1 AACCCTG
5277 AACCCTG
1 AACCCTG
5284 AACCCTG
1 AACCCTG
5291 AACCCTG
1 AACCCTG
5298 AACCCTG
1 AACCCTG
5305 AACCCTG
1 AACCCTG
5312 AACCCTG
1 AACCCTG
5319 AACCCTG
1 AACCCTG
5326 AA-CCTG
1 AACCCTG
5332 AACCCTG
1 AACCCTG
5339 AACCCTG
1 AACCCTG
5346 AACCCTG
1 AACCCTG
5353 AACCCTG
1 AACCCTG
5360 AACCCTG
1 AACCCTG
5367 AACCCTG
1 AACCCTG
5374 AACCCTG
1 AACCCTG
5381 AACCCTG
1 AACCCTG
5388 AACCCTG
1 AACCCTG
5395 AACCCTG
1 AACCCTG
5402 AACCCTG
1 AACCCTG
5409 AACCCTG
1 AACCCTG
5416 AACCCTG
1 AACCCTG
5423 AACCCTG
1 AACCCTG
5430 AACCCTG
1 AACCCTG
5437 AA-CCTG
1 AACCCTG
5443 AACCCTG
1 AACCCTG
5450 AACCCTG
1 AACCCTG
5457 AACCCTG
1 AACCCTG
5464 AACCCTG
1 AACCCTG
5471 AACCCTG
1 AACCCTG
5478 -ACCCTG
1 AACCCTG
5484 AACCCTG
1 AACCCTG
5491 AA-CCTG
1 AACCCTG
5497 AACCCTG
1 AACCCTG
5504 AACCCTG
1 AACCCTG
5511 AACCCTG
1 AACCCTG
5518 AACCCTG
1 AACCCTG
5525 AACCCTG
1 AACCCTG
5532 AACCCTG
1 AACCCTG
5539 AACCCTG
1 AACCCTG
5546 AACCCTG
1 AACCCTG
5553 AACCCTG
1 AACCCTG
5560 AACCCTG
1 AACCCTG
5567 AACCCTG
1 AACCCTG
5574 AACCCTG
1 AACCCTG
5581 AACCCTG
1 AACCCTG
5588 AACCCTG
1 AACCCTG
5595 AACCCTG
1 AACCCTG
5602 AACCCTG
1 AACCCTG
5609 AACCCTG
1 AACCCTG
5616 AACCCTG
1 AACCCTG
5623 AA-CCTG
1 AACCCTG
5629 AACCCTG
1 AACCCTG
5636 AACCCTG
1 AACCCTG
5643 AACCCTG
1 AACCCTG
5650 AA-CCTG
1 AACCCTG
5656 AACCCTG
1 AACCCTG
5663 AACCCTG
1 AACCCTG
5670 AACCCTG
1 AACCCTG
5677 AACCCTG
1 AACCCTG
5684 AACCCTG
1 AACCCTG
5691 AACCCTG
1 AACCCTG
5698 AA-CCTG
1 AACCCTG
5704 AACCCTG
1 AACCCTG
5711 AACCCTG
1 AACCCTG
5718 AACCCTG
1 AACCCTG
5725 AACCCTG
1 AACCCTG
5732 AACCCTG
1 AACCCTG
5739 AACCCTG
1 AACCCTG
5746 AACCCTG
1 AACCCTG
5753 AA-CCTG
1 AACCCTG
5759 AACCCTG
1 AACCCTG
5766 AACCCTG
1 AACCCTG
5773 AACCCTG
1 AACCCTG
5780 AA-CCTG
1 AACCCTG
5786 AACCCTG
1 AACCCTG
5793 AACCCTG
1 AACCCTG
5800 AACCCTG
1 AACCCTG
5807 AACCCTG
1 AACCCTG
5814 AACCCTG
1 AACCCTG
5821 AACCCTG
1 AACCCTG
5828 AACCCTG
1 AACCCTG
5835 AACCCTG
1 AACCCTG
5842 AACCCTG
1 AACCCTG
5849 AACCCTG
1 AACCCTG
5856 AACCCTG
1 AACCCTG
5863 AACCCTG
1 AACCCTG
5870 AACCCTG
1 AACCCTG
5877 AACCCTG
1 AACCCTG
5884 AACCCTG
1 AACCCTG
5891 AACCCTG
1 AACCCTG
5898 AACCCTG
1 AACCCTG
5905 AACCCTG
1 AACCCTG
5912 AA-CCTG
1 AACCCTG
5918 AACCCTG
1 AACCCTG
5925 AACCCTG
1 AACCCTG
5932 AACCCTG
1 AACCCTG
5939 AACCCTG
1 AACCCTG
5946 AACCCTG
1 AACCCTG
5953 AACCCTG
1 AACCCTG
5960 AACCCTG
1 AACCCTG
5967 AACCCTG
1 AACCCTG
5974 AACCCTG
1 AACCCTG
5981 AA-CCTG
1 AACCCTG
5987 AACCCTG
1 AACCCTG
5994 AACCCTG
1 AACCCTG
6001 AACCCTG
1 AACCCTG
6008 AACCCTG
1 AACCCTG
6015 AACCCTG
1 AACCCTG
6022 AACCCTG
1 AACCCTG
6029 AACCCTG
1 AACCCTG
6036 AACCCTG
1 AACCCTG
6043 AACCCTG
1 AACCCTG
6050 AA-CCTG
1 AACCCTG
6056 AACCCTG
1 AACCCTG
6063 AACCCTG
1 AACCCTG
6070 AACCCTG
1 AACCCTG
6077 AACCCTG
1 AACCCTG
6084 AACCCTG
1 AACCCTG
6091 AACCCTG
1 AACCCTG
6098 AACCCTG
1 AACCCTG
6105 AACCCTG
1 AACCCTG
6112 AACCCTG
1 AACCCTG
6119 AACCCTG
1 AACCCTG
6126 AACCCTG
1 AACCCTG
6133 AACCCTG
1 AACCCTG
6140 AACCCTG
1 AACCCTG
6147 AACCCTG
1 AACCCTG
6154 AACCCTG
1 AACCCTG
6161 AACCCTG
1 AACCCTG
6168 AACCCTG
1 AACCCTG
6175 AACCCTG
1 AACCCTG
6182 AACCCTG
1 AACCCTG
6189 AACCCTG
1 AACCCTG
6196 AACCCTG
1 AACCCTG
6203 AACCCTG
1 AACCCTG
6210 AACCCTG
1 AACCCTG
6217 AACCCCCTG
1 AA--CCCTG
6226 AACCCTG
1 AACCCTG
6233 AACCCTG
1 AACCCTG
6240 AACCCTG
1 AACCCTG
6247 AACCCTG
1 AACCCTG
6254 AACCCTG
1 AACCCTG
6261 AACCCTG
1 AACCCTG
6268 AACCCTG
1 AACCCTG
6275 AACCCTG
1 AACCCTG
6282 AACCCTG
1 AACCCTG
6289 AACCCTG
1 AACCCTG
6296 AACCCTG
1 AACCCTG
6303 AACCCTG
1 AACCCTG
6310 AAC
1 AAC
6313 ATGCGAATAC
Statistics
Matches: 6071, Mismatches: 42, Indels: 382
0.93 0.01 0.06
Matches are distributed among these distances:
4 6 0.00
5 64 0.01
6 721 0.12
7 5067 0.83
8 174 0.03
9 33 0.01
10 6 0.00
ACGTcount: A:0.33, C:0.43, G:0.10, T:0.14
Consensus pattern (7 bp):
AACCCTG
Found at i:6338 original size:20 final size:20
Alignment explanation
Indices: 6313--6353 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
6303 AACCCTGAAC
6313 ATGCGAATAC-GTAAATCGCA
1 ATGCGAAT-CTGTAAATCGCA
6333 ATGCGAATCTGTAAATCGCA
1 ATGCGAATCTGTAAATCGCA
6353 A
1 A
6354 CGAGATTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (20 bp):
ATGCGAATCTGTAAATCGCA
Found at i:7246 original size:24 final size:24
Alignment explanation
Indices: 7214--7267 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
7204 GTATTCGAAA
*
7214 TTTGATCTTGGTTAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
7238 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
7262 TTTGAT
1 TTTGAT
7268 GATTTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:9841 original size:33 final size:33
Alignment explanation
Indices: 9804--9912 Score: 146
Period size: 33 Copynumber: 3.3 Consensus size: 33
9794 GGAAATTACT
9804 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
* * * **
9837 ATCGCAACGTGAAAATCGCAACGCAGAAATGACT
1 ATCGCAACGAGAGAATCGCAATGC-GAAATGAAA
*
9871 ATCGCAACGAGGGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
*
9904 ATTGCAACG
1 ATCGCAACG
9913 CGAATTTAGT
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
33 36 0.57
34 27 0.43
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.14
Consensus pattern (33 bp):
ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
Found at i:9851 original size:14 final size:14
Alignment explanation
Indices: 9832--9859 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9822 CAATGCGAAA
9832 TGAAAATCGCAACG
1 TGAAAATCGCAACG
9846 TGAAAATCGCAACG
1 TGAAAATCGCAACG
9860 CAGAAATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (14 bp):
TGAAAATCGCAACG
Found at i:9866 original size:14 final size:14
Alignment explanation
Indices: 9804--9865 Score: 52
Period size: 14 Copynumber: 4.0 Consensus size: 14
9794 GGAAATTACT
*
9804 ATCGCAACGAGAGA
1 ATCGCAACGAGAAA
9818 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
*
9837 ATCGCAACGTGAAA
1 ATCGCAACGAGAAA
9851 ATCGCAACGCAGAAA
1 ATCGCAACG-AGAAA
9866 TGACTATCGC
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
14 20 0.51
15 4 0.10
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.45, C:0.21, G:0.23, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:9875 original size:34 final size:33
Alignment explanation
Indices: 9784--9901 Score: 146
Period size: 34 Copynumber: 3.5 Consensus size: 33
9774 CTTAATGTCT
*
9784 ATCGCAACGCGGAAATTACTATCGCAACGAGAGA
1 ATCGCAACGC-GAAATGACTATCGCAACGAGAGA
* ** * *
9818 ATCGCAATGCGAAATGAAAATCGCAACGTGAAA
1 ATCGCAACGCGAAATGACTATCGCAACGAGAGA
*
9851 ATCGCAACGCAGAAATGACTATCGCAACGAGGGA
1 ATCGCAACGC-GAAATGACTATCGCAACGAGAGA
*
9885 ATCGCAATGCGAAATGA
1 ATCGCAACGCGAAATGA
9902 AAATTGCAAC
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
33 34 0.49
34 36 0.51
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.14
Consensus pattern (33 bp):
ATCGCAACGCGAAATGACTATCGCAACGAGAGA
Found at i:9892 original size:67 final size:67
Alignment explanation
Indices: 9784--9912 Score: 222
Period size: 67 Copynumber: 1.9 Consensus size: 67
9774 CTTAATGTCT
* *
9784 ATCGCAACGCGGAAATTACTATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGTGA
1 ATCGCAACGCAGAAATGACTATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGTGA
9849 AA
66 AA
* *
9851 ATCGCAACGCAGAAATGACTATCGCAACGAGGGAATCGCAATGCGAAATGAAAATTGCAACG
1 ATCGCAACGCAGAAATGACTATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACG
9913 CGAATTTAGT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.15
Consensus pattern (67 bp):
ATCGCAACGCAGAAATGACTATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGTGA
AA
Found at i:9934 original size:19 final size:19
Alignment explanation
Indices: 9912--9974 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
9902 AAATTGCAAC
*
9912 GCGAATTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
9931 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
* *
9950 GCGATTTTAATTTCGCATT
1 GCGATTTTAGTTTCGCGTT
9969 GCGATT
1 GCGATT
9975 CTCTCGTTGC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:10005 original size:19 final size:19
Alignment explanation
Indices: 9922--10006 Score: 83
Period size: 19 Copynumber: 4.7 Consensus size: 19
9912 GCGAATTTAG
*
9922 TTTCGCGTTGCGATTTT-A
1 TTTCGCATTGCGATTTTCA
* *
9940 GTTTCGCGTTGCGATTTTAA
1 -TTTCGCATTGCGATTTTCA
9960 TTTCGCATTGCGA--TTC-
1 TTTCGCATTGCGATTTTCA
*
9976 TCTCG--TTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
9993 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
10007 AGTCATTTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
14 6 0.11
16 7 0.12
17 6 0.11
19 36 0.64
20 1 0.02
ACGTcount: A:0.13, C:0.20, G:0.21, T:0.46
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:11519 original size:21 final size:20
Alignment explanation
Indices: 11486--11546 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
11476 GTGAATCGGG
*
11486 CTCTTGAATGATGGGAGGGAC
1 CTCTTGAACGATGGGAGGG-C
* **
11507 CTCTTCAACGATGACAGTGGC
1 CTCTTGAACGATGGGAG-GGC
*
11528 CTCTTGAACGGTGGGAGGG
1 CTCTTGAACGATGGGAGGG
11547 GACTTTCGAG
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.23
Consensus pattern (20 bp):
CTCTTGAACGATGGGAGGGC
Found at i:13595 original size:20 final size:20
Alignment explanation
Indices: 13570--13632 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
13560 TTTTGGTTGA
13570 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
*
13590 AATGAAAATCGCAACGCG-G
1 AATGAAAATCGCAACGAGAG
**
13609 AAATGACTATCGCAACGAGAG
1 -AATGAAAATCGCAACGAGAG
13630 AAT
1 AAT
13633 CACAACGCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 35 0.95
21 1 0.03
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.13
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:13612 original size:40 final size:37
Alignment explanation
Indices: 13568--13665 Score: 114
Period size: 33 Copynumber: 2.7 Consensus size: 37
13558 TCTTTTGGTT
*
13568 GAAATGAAAATCGCAACGAGAGAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATG--AATCACAACGC
**
13607 GGAAATGACTATCGCAAC--GAG-A-GAATCACAACGC
1 -GAAATGAAAATCGCAACGAGAGAATGAATCACAACGC
13641 GAAATGAAAATCGCAACGAGAGAAT
1 GAAATGAAAATCGCAACGAGAGAAT
13666 CGCGTAGCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
33 15 0.31
34 10 0.20
35 3 0.06
36 2 0.04
37 1 0.02
38 3 0.06
40 15 0.31
ACGTcount: A:0.47, C:0.18, G:0.23, T:0.11
Consensus pattern (37 bp):
GAAATGAAAATCGCAACGAGAGAATGAATCACAACGC
Found at i:13647 original size:33 final size:34
Alignment explanation
Indices: 13568--13691 Score: 110
Period size: 33 Copynumber: 3.5 Consensus size: 34
13558 TCTTTTGGTT
*
13568 GAAATGAAAATCGCAACGAGAGAATGAAAATCGCAACGCG
1 GAAATGAAAATCGCAAC--GAG-A-G--AATCACAACGCG
**
13608 GAAATGACTATCGCAACGAGAGAATCACAACGC-
1 GAAATGAAAATCGCAACGAGAGAATCACAACGCG
* *
13641 GAAATGAAAATCGCAACGAGAGAATCGCGTA-GC-
1 GAAATGAAAATCGCAACGAGAGAATCAC-AACGCG
*
13674 GAAATAAAAATCGCAACG
1 GAAATGAAAATCGCAACG
13692 CGAAATGAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
33 44 0.59
34 11 0.15
36 1 0.01
37 1 0.01
38 3 0.04
40 15 0.20
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.11
Consensus pattern (34 bp):
GAAATGAAAATCGCAACGAGAGAATCACAACGCG
Found at i:13657 original size:19 final size:19
Alignment explanation
Indices: 13568--13713 Score: 98
Period size: 19 Copynumber: 8.1 Consensus size: 19
13558 TCTTTTGGTT
*
13568 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
13587 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
13607 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
* *
13625 G--A-GAGAATCACAACGC
1 GAAATGAAAATCGCAACGC
13641 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
* *
13658 G--A-GAGAATCGCGTA-GC
1 GAAATGAAAATCGC-AACGC
*
13674 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
* *
13693 GAAATGAAAATTGCAATGC
1 GAAATGAAAATCGCAACGC
13712 GA
1 GA
13714 TTTTGGTTTC
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
14 16 0.16
15 3 0.03
16 4 0.04
17 3 0.03
18 4 0.04
19 38 0.39
20 28 0.29
21 2 0.02
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:13744 original size:14 final size:14
Alignment explanation
Indices: 13725--13781 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
13715 TTTGGTTTCA
13725 CGTTGCGATTATCT
1 CGTTGCGATTATCT
*
13739 CGTTGCGATTTTCATTTT
1 CGTTGCGA--TT-A-TCT
*
13757 GCGTTGCGATTCTCT
1 -CGTTGCGATTATCT
13772 CGTTGCGATT
1 CGTTGCGATT
13782 TTCATTTCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 18 0.51
15 2 0.06
16 2 0.06
17 3 0.09
18 2 0.06
19 8 0.23
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTATCT
Found at i:13762 original size:33 final size:33
Alignment explanation
Indices: 13725--13788 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
13715 TTTGGTTTCA
13725 CGTTGCGATTATCTCGTTGCGATTTTCATTTTG
1 CGTTGCGATTATCTCGTTGCGATTTTCATTTTG
*
13758 CGTTGCGATTCTCTCGTTGCGATTTTCATTT
1 CGTTGCGATTATCTCGTTGCGATTTTCATTT
13789 CTCTCGTTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.11, C:0.20, G:0.20, T:0.48
Consensus pattern (33 bp):
CGTTGCGATTATCTCGTTGCGATTTTCATTTTG
Found at i:13842 original size:20 final size:19
Alignment explanation
Indices: 13740--13844 Score: 96
Period size: 20 Copynumber: 5.6 Consensus size: 19
13730 CGATTATCTC
13740 GTTGCGATTTTCATTTTGC-
1 GTTGCGATTTTCATTTT-CT
*
13759 GTTGCGA--TTC--TCTC-
1 GTTGCGATTTTCATTTTCT
13773 GTTGCGATTTTCATTTCTCT
1 GTTGCGATTTTCATTT-TCT
**
13793 CGTTGCGATAGTCATTTTCGT
1 -GTTGCGATTTTCATTTTC-T
13814 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTC-T
13834 GTTGCGATTTT
1 GTTGCGATTTT
13845 AAGTTTAGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
14 8 0.11
15 2 0.03
16 3 0.04
17 3 0.04
18 1 0.01
19 9 0.13
20 30 0.42
21 15 0.21
ACGTcount: A:0.11, C:0.18, G:0.20, T:0.50
Consensus pattern (19 bp):
GTTGCGATTTTCATTTTCT
Found at i:14342 original size:20 final size:20
Alignment explanation
Indices: 14314--14527 Score: 184
Period size: 20 Copynumber: 10.7 Consensus size: 20
14304 GCTTTAAAAA
14314 TCGCGTTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGTAT
*
14334 TCGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGTAT
* * *
14354 TCGCATTGTGATTTACGGAT
1 TCGCGTTGCGATTTACGTAT
* *
14374 ACGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGTAT
*
14394 TCTCGTTGCGATTTACAG-AT
1 TCGCGTTGCGATTTAC-GTAT
*
14414 ACGCGTTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGTAT
*
14434 T-GTCGTTGCGATTTACGGAT
1 TCG-CGTTGCGATTTACGTAT
* * *
14454 ACGGGTTGCGATTTTACGGAT
1 TCGCGTTGCGA-TTTACGTAT
* * * *
14475 ACTCGTTGCGATAGT-CAG-AA
1 TCGCGTTGCGAT-TTAC-GTAT
** *
14495 TCGCGTTGCGATTTATATGT
1 TCGCGTTGCGATTTACGTAT
14515 TCGCGTTGCGATT
1 TCGCGTTGCGATT
14528 CTGGAAAATC
Statistics
Matches: 159, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.02
20 134 0.84
21 22 0.14
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.37
Consensus pattern (20 bp):
TCGCGTTGCGATTTACGTAT
Found at i:14379 original size:40 final size:40
Alignment explanation
Indices: 14314--14486 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
14304 GCTTTAAAAA
* *
14314 TCGCGTTGCGATTTACGTATTCGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGATTTACGTAT
* *
14354 TCGCATTGTGATTTACGGATACGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGATTTACGTAT
* * *
14394 TCTCGTTGCGATTTACAGATACGCGTTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGATTTACGTAT
** *
14434 T-GTCGTTGCGATTTACGGATACGGGTTGCGATTTTACGGAT
1 TCG-CGTTGCGATTTACGGATACGCATTGCGA-TTTACGTAT
* *
14475 ACTCGTTGCGAT
1 TCGCGTTGCGAT
14487 AGTCAGAATC
Statistics
Matches: 115, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
40 98 0.85
41 17 0.15
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (40 bp):
TCGCGTTGCGATTTACGGATACGCATTGCGATTTACGTAT
Found at i:14545 original size:21 final size:21
Alignment explanation
Indices: 14515--14596 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
14505 ATTTATATGT
*
14515 TCGCGTTGCGATTCTGGAAAA
1 TCGCATTGCGATTCTGGAAAA
* * **
14536 TCGCAATGCGAATT-TGTACTA
1 TCGCATTGCG-ATTCTGGAAAA
** *
14557 TCGCATTGCGATTCTTCATAA
1 TCGCATTGCGATTCTGGAAAA
*
14578 TCGCGTTGCGATTCTGGAA
1 TCGCATTGCGATTCTGGAA
14597 CTGATTTGCG
Statistics
Matches: 45, Mismatches: 14, Indels: 4
0.71 0.22 0.06
Matches are distributed among these distances:
20 3 0.07
21 39 0.87
22 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (21 bp):
TCGCATTGCGATTCTGGAAAA
Found at i:14588 original size:42 final size:42
Alignment explanation
Indices: 14493--14588 Score: 97
Period size: 42 Copynumber: 2.3 Consensus size: 42
14483 CGATAGTCAG
* * *
14493 AATCGCGTTGCG-ATTTATATGTTCGCGTTGCGATTCTGGAA
1 AATCGCGTTGCGAATTTATATGATCGCATTGCGATTCTGCAA
** * * *
14534 AATCGCAATGCGAATTTGTACT-ATCGCATTGCGATTCTTCAT
1 AATCGCGTTGCGAATTTATA-TGATCGCATTGCGATTCTGCAA
14576 AATCGCGTTGCGA
1 AATCGCGTTGCGA
14589 TTCTGGAACT
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
41 10 0.23
42 32 0.74
43 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (42 bp):
AATCGCGTTGCGAATTTATATGATCGCATTGCGATTCTGCAA
Found at i:45544 original size:24 final size:24
Alignment explanation
Indices: 45517--45587 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
45507 AGCTCGTATA
45517 AATTTGCACCGAAGTGCCACGTAG
1 AATTTGCACCGAAGTGCCACGTAG
*
45541 AATTTGTC-CCGAAG-GACCGCGTAG
1 AATTTG-CACCGAAGTG-CCACGTAG
*
45565 AA-ATGCACCGAAGTGCCACGTAG
1 AATTTGCACCGAAGTGCCACGTAG
45588 TGCCAAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.03
23 16 0.40
24 22 0.55
25 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (24 bp):
AATTTGCACCGAAGTGCCACGTAG
Found at i:45868 original size:30 final size:30
Alignment explanation
Indices: 45827--45895 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
45817 ACATAGTTCA
* * *
45827 TATCACGTAGACGTATTATTTCCATACCTT
1 TATCACATAGACATATCATTTCCATACCTT
45857 TATCACATAGACATATCATTTCCATACCTT
1 TATCACATAGACATATCATTTCCATACCTT
*
45887 TATTACATA
1 TATCACATA
45896 CATATAACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (30 bp):
TATCACATAGACATATCATTTCCATACCTT
Found at i:45909 original size:30 final size:30
Alignment explanation
Indices: 45844--45909 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
45834 TAGACGTATT
* *
45844 ATTTCCATACCTTTATCACATAGACATATC
1 ATTTCCATACCTTTATCACATACACATAAC
* *
45874 ATTTCCATACCTTTATTACATACATATAAC
1 ATTTCCATACCTTTATCACATACACATAAC
*
45904 TTTTCC
1 ATTTCC
45910 TGCATATTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.32, C:0.26, G:0.02, T:0.41
Consensus pattern (30 bp):
ATTTCCATACCTTTATCACATACACATAAC
Found at i:62129 original size:3 final size:3
Alignment explanation
Indices: 62121--62145 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
62111 CTCTATATTC
62121 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
62146 AACCCACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:62620 original size:24 final size:24
Alignment explanation
Indices: 62593--62641 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
62583 ACGTCTTGAA
62593 GCCTTTCTCGTGTGAATGAGTCGT
1 GCCTTTCTCGTGTGAATGAGTCGT
62617 GCCTTTCTCGTGTGAATGAGTCGT
1 GCCTTTCTCGTGTGAATGAGTCGT
62641 G
1 G
62642 GGAGTAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.20, G:0.31, T:0.37
Consensus pattern (24 bp):
GCCTTTCTCGTGTGAATGAGTCGT
Found at i:64160 original size:42 final size:42
Alignment explanation
Indices: 64099--64261 Score: 281
Period size: 42 Copynumber: 3.9 Consensus size: 42
64089 CAAGCCATGC
*
64099 ACACCTTCTATCCCTAAACTCACTCCTTCCACCATCATTCCG
1 ACACCTTCTATCCCTAAACTCACTCCTTCCACCGTCATTCCG
*
64141 ACACCTTCTATCCCGAAACTCACTCCTTCCACCGTCATTCCG
1 ACACCTTCTATCCCTAAACTCACTCCTTCCACCGTCATTCCG
**
64183 ACACCTTCTATCCCTAAACTCACTCCTTCCATTGTCATTCCG
1 ACACCTTCTATCCCTAAACTCACTCCTTCCACCGTCATTCCG
*
64225 ACACCTTCTATCCCTAAACCCACTCCTTCCACCGTCA
1 ACACCTTCTATCCCTAAACTCACTCCTTCCACCGTCA
64262 ACGCCAGTCC
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 113 1.00
ACGTcount: A:0.23, C:0.45, G:0.04, T:0.28
Consensus pattern (42 bp):
ACACCTTCTATCCCTAAACTCACTCCTTCCACCGTCATTCCG
Found at i:64210 original size:21 final size:21
Alignment explanation
Indices: 64102--64211 Score: 57
Period size: 21 Copynumber: 5.2 Consensus size: 21
64092 GCCATGCACA
64102 CCTTCTATCCCTAAACTCACT
1 CCTTCTATCCCTAAACTCACT
* * * * *
64123 CCTTCCA-CCAT-CATTCCGACA
1 CCTTCTATCCCTAAACT-C-ACT
*
64144 CCTTCTATCCCGAAACTCACT
1 CCTTCTATCCCTAAACTCACT
* * * * *
64165 CCTTCCA-CCGT-CATTCCGACA
1 CCTTCTATCCCTAAACT-C-ACT
64186 CCTTCTATCCCTAAACTCACT
1 CCTTCTATCCCTAAACTCACT
64207 CCTTC
1 CCTTC
64212 CATTGTCATT
Statistics
Matches: 59, Mismatches: 22, Indels: 16
0.61 0.23 0.16
Matches are distributed among these distances:
19 4 0.07
20 7 0.12
21 37 0.63
22 7 0.12
23 4 0.07
ACGTcount: A:0.22, C:0.45, G:0.04, T:0.29
Consensus pattern (21 bp):
CCTTCTATCCCTAAACTCACT
Found at i:66755 original size:30 final size:30
Alignment explanation
Indices: 66719--66782 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
66709 GAAGGACCTG
* *
66719 TCCAGAGGTTACAAAGAACCCCGGTAACTA
1 TCCAGAGGTCACAAAGAACCCCGGCAACTA
* * *
66749 TCCAGAGGTCATAAAGATCCTCGGCAACTA
1 TCCAGAGGTCACAAAGAACCCCGGCAACTA
66779 TCCA
1 TCCA
66783 TATGTTCCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (30 bp):
TCCAGAGGTCACAAAGAACCCCGGCAACTA
Found at i:67549 original size:19 final size:19
Alignment explanation
Indices: 67525--67576 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
67515 TAATAACGGG
67525 ATGCATCGATGCACTACTT
1 ATGCATCGATGCACTACTT
67544 ATGCATCGATGCACTACTT
1 ATGCATCGATGCACTACTT
67563 ATGCATCGATGCAC
1 ATGCATCGATGCAC
67577 GAATTACATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
ATGCATCGATGCACTACTT
Found at i:67609 original size:83 final size:82
Alignment explanation
Indices: 67460--67639 Score: 245
Period size: 83 Copynumber: 2.2 Consensus size: 82
67450 TTAATGAAGG
* * *
67460 TATGCATCGATGCACTACTTGTGCATCGATGCATAAAATGCATTCGATGTTTCATTAATAACGGG
1 TATGCATCGATGCACTACTTATGCATCGATGCACAAAATACATTCGATGTTTCATTAAT-ACGGG
* *
67525 ATGCATCGATGCACTACT
65 ATGCATCGATGCACGAAT
* * * *
67543 TATGCATCGATGCACTACTTATGCATCGATGCACGAATTACATTCGATGTTTTTATTTAAT-GGG
1 TATGCATCGATGCACTACTTATGCATCGATGCACAAAATACATTCGATG-TTTCA-TTAATACGG
67607 GATGCATCGATGCACGAAT
64 GATGCATCGATGCACGAAT
67626 TATGCATCGATGCA
1 TATGCATCGATGCA
67640 TAAATCCTAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
83 77 0.90
84 4 0.05
85 5 0.06
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (82 bp):
TATGCATCGATGCACTACTTATGCATCGATGCACAAAATACATTCGATGTTTCATTAATACGGGA
TGCATCGATGCACGAAT
Found at i:67612 original size:64 final size:65
Alignment explanation
Indices: 67544--67700 Score: 203
Period size: 64 Copynumber: 2.4 Consensus size: 65
67534 TGCACTACTT
* ** *
67544 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTAC-ATTCGATGTTTT-TATTTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCA-GAAATACTATTCGATGTTTTCTATTTAAAAGA
67607 G
65 G
* * * *
67608 ATGCATCGATGCACGAATTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAAGAG
1 ATGCATCGATGCACTACTTATGCATCGATGCAGAAATACTATTCGATGTTTTCTATTTAAAAGAG
*
67673 -TGCATCGATGCACTACCTATGCATCGAT
1 ATGCATCGATGCACTACTTATGCATCGAT
67701 ACACCTTCAA
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
63 4 0.05
64 67 0.84
65 9 0.11
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (65 bp):
ATGCATCGATGCACTACTTATGCATCGATGCAGAAATACTATTCGATGTTTTCTATTTAAAAGAG
Found at i:82810 original size:18 final size:18
Alignment explanation
Indices: 82789--82831 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
82779 GTTGTTTTTA
82789 AAATAAAA-AATAAGAATT
1 AAATAAAAGAA-AAGAATT
*
82807 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAAGAATT
82825 AAATAAA
1 AAATAAA
82832 TAATTTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAAGAAAAGAATT
Found at i:87541 original size:2 final size:2
Alignment explanation
Indices: 87534--87633 Score: 68
Period size: 2 Copynumber: 53.0 Consensus size: 2
87524 TCGGGCCGGG
* * * *
87534 TA TA TA TA TA TA TA TA TT TA AA T- TA AA TA TA TA AA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
87575 T- TT TT TA TT TA AA T- TA AA TT TA T- TA -A TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87612 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
87634 ATTATTTTTA
Statistics
Matches: 75, Mismatches: 17, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
1 6 0.08
2 69 0.92
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87706 original size:13 final size:13
Alignment explanation
Indices: 87650--87693 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
87640 TTTAATATTT
*
87650 ATCGGGTCGGGT-
1 ATCGGGGCGGGTA
87662 ATCGGGGCGGGTA
1 ATCGGGGCGGGTA
87675 ATCGGGGCGGGTA
1 ATCGGGGCGGGTA
87688 ATCGGG
1 ATCGGG
87694 TAATCGGGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 11 0.37
13 19 0.63
ACGTcount: A:0.14, C:0.16, G:0.52, T:0.18
Consensus pattern (13 bp):
ATCGGGGCGGGTA
Found at i:89124 original size:23 final size:23
Alignment explanation
Indices: 89082--89125 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
89072 ATTACATATA
*
89082 TGTCCCGAAGGACCATGTAGAAT
1 TGTCCCGAAGGACCACGTAGAAT
*
89105 TGTCCCGAAGGACCGCGTAGA
1 TGTCCCGAAGGACCACGTAGA
89126 CCCTCTACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (23 bp):
TGTCCCGAAGGACCACGTAGAAT
Found at i:89428 original size:2 final size:2
Alignment explanation
Indices: 89421--89477 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
89411 CATATTTTTC
89421 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89463 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
89478 AATTCATGTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:90269 original size:26 final size:28
Alignment explanation
Indices: 90233--90284 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
90223 ATTTAGTTTC
**
90233 AAATTCAACTTATCAACTC-TTTTCTAA
1 AAATTCAACTTAAAAACTCATTTTCTAA
90260 AAATTC-ACTTAAAAACTCATTTTCT
1 AAATTCAACTTAAAAACTCATTTTCT
90285 TTAATCTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (28 bp):
AAATTCAACTTAAAAACTCATTTTCTAA
Found at i:94101 original size:14 final size:15
Alignment explanation
Indices: 94069--94109 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
94059 CTGGAAGCAT
94069 AAATTCAAACAAAAA
1 AAATTCAAACAAAAA
*
94084 AAATTCAAAC-AGAA
1 AAATTCAAACAAAAA
94098 AAATTC-AACAAA
1 AAATTCAAACAAA
94110 GTAAAACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 3 0.13
14 10 0.43
15 10 0.43
ACGTcount: A:0.68, C:0.15, G:0.02, T:0.15
Consensus pattern (15 bp):
AAATTCAAACAAAAA
Found at i:94115 original size:15 final size:15
Alignment explanation
Indices: 94069--94115 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
94059 CTGGAAGCAT
94069 AAATTCAAACAAA-AA
1 AAATTC-AACAAAGAA
*
94084 AAATTCAA-ACAGAA
1 AAATTCAACAAAGAA
94098 AAATTCAACAAAGTAA
1 AAATTCAACAAAG-AA
94114 AA
1 AA
94116 CATTATACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 2 0.07
14 12 0.44
15 9 0.33
16 4 0.15
ACGTcount: A:0.68, C:0.13, G:0.04, T:0.15
Consensus pattern (15 bp):
AAATTCAACAAAGAA
Found at i:95896 original size:21 final size:21
Alignment explanation
Indices: 95872--96002 Score: 91
Period size: 21 Copynumber: 6.4 Consensus size: 21
95862 TTTTATAATG
95872 TTAAAATATATTATTTAATTA
1 TTAAAATATATTATTTAATTA
* *
95893 TTAAAATATAGTAAATT-ATTA
1 TTAAAATATA-TTATTTAATTA
* *
95914 TAAAAATATATTATTTTAATCA
1 TTAAAATATATTA-TTTAATTA
* *
95936 TTTAAAATATA--A-TAAATGA
1 -TTAAAATATATTATTTAATTA
*
95955 TTATAA-ATA-TA-TT-ATTA
1 TTAAAATATATTATTTAATTA
95972 -TAAAATATATTATTTAAATTA
1 TTAAAATATATTATTT-AATTA
95993 TTTAAAATAT
1 -TTAAAATAT
96003 TGATATATTT
Statistics
Matches: 85, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
16 4 0.05
17 9 0.11
18 9 0.11
19 7 0.08
20 2 0.02
21 30 0.35
22 7 0.08
23 17 0.20
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.47
Consensus pattern (21 bp):
TTAAAATATATTATTTAATTA
Found at i:95952 original size:44 final size:43
Alignment explanation
Indices: 95874--95972 Score: 137
Period size: 44 Copynumber: 2.3 Consensus size: 43
95864 TTATAATGTT
* * *
95874 AAAATATATTA-TTTAATTATTAAAATATAGTAAATTATTATA
1 AAAATATATTATTTTAATCATTAAAATATAATAAATGATTATA
95916 AAAATATATTATTTTAATCATTTAAAATATAATAAATGATTATA
1 AAAATATATTATTTTAATCA-TTAAAATATAATAAATGATTATA
*
95960 AATATATTATTAT
1 AAAATA-TATTAT
95973 AAAATATATT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 11 0.22
43 7 0.14
44 26 0.52
45 6 0.12
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (43 bp):
AAAATATATTATTTTAATCATTAAAATATAATAAATGATTATA
Found at i:95971 original size:14 final size:14
Alignment explanation
Indices: 95954--95994 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
95944 ATAATAAATG
95954 ATTATAAATATATT
1 ATTATAAATATATT
95968 ATTATAAAATATATT
1 ATTAT-AAATATATT
95983 ATT-TAAAT-TATT
1 ATTATAAATATATT
95995 TAAAATATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.15
13 4 0.15
14 6 0.23
15 12 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
ATTATAAATATATT
Found at i:98820 original size:7 final size:7
Alignment explanation
Indices: 98804--98841 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
98794 GTCAAAGAAA
98804 GTCAACG
1 GTCAACG
*
98811 GTCAATG
1 GTCAACG
98818 GTCAACG
1 GTCAACG
98825 GTCAACG
1 GTCAACG
98832 GTCAACG
1 GTCAACG
98839 GTC
1 GTC
98842 GGGTCGGGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (7 bp):
GTCAACG
Found at i:98866 original size:22 final size:22
Alignment explanation
Indices: 98838--98887 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
98828 AACGGTCAAC
98838 GGTCGGGTCGGGTCAACGGACG
1 GGTCGGGTCGGGTCAACGGACG
* *
98860 GGTCGGGTTGGGTCAACGGTCG
1 GGTCGGGTCGGGTCAACGGACG
98882 GGTCGG
1 GGTCGG
98888 TTCAGACCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.10, C:0.20, G:0.52, T:0.18
Consensus pattern (22 bp):
GGTCGGGTCGGGTCAACGGACG
Found at i:98884 original size:17 final size:17
Alignment explanation
Indices: 98831--98867 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
98821 AACGGTCAAC
98831 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
*
98848 GGTCAACGGACGGGTCG
1 GGTCAACGGTCGGGTCG
98865 GGT
1 GGT
98868 TGGGTCAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.22, G:0.49, T:0.16
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:98905 original size:9 final size:9
Alignment explanation
Indices: 98893--98984 Score: 67
Period size: 9 Copynumber: 9.7 Consensus size: 9
98883 GTCGGTTCAG
98893 ACCGGTCAA
1 ACCGGTCAA
*
98902 ACCGGTTCAG
1 ACCGG-TCAA
98912 ACCGGTCAA
1 ACCGGTCAA
*
98921 ACCGGTTCAG
1 ACCGG-TCAA
*
98931 ACCGGTCGA
1 ACCGGTCAA
*
98940 ACCGGTTCAG
1 ACCGG-TCAA
* *
98950 ATCGGTCGA
1 ACCGGTCAA
*
98959 ACCGGTTGAAA
1 ACCGG-T-CAA
*
98970 ACCGGTTAA
1 ACCGGTCAA
98979 ACCGGT
1 ACCGGT
98985 TTCCAGCAGC
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
9 34 0.53
10 24 0.38
11 6 0.09
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.17
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:98907 original size:19 final size:19
Alignment explanation
Indices: 98885--98985 Score: 139
Period size: 19 Copynumber: 5.3 Consensus size: 19
98875 ACGGTCGGGT
98885 CGGTTCAGACCGGTCAAAC
1 CGGTTCAGACCGGTCAAAC
98904 CGGTTCAGACCGGTCAAAC
1 CGGTTCAGACCGGTCAAAC
*
98923 CGGTTCAGACCGGTCGAAC
1 CGGTTCAGACCGGTCAAAC
* *
98942 CGGTTCAGATCGGTCGAAC
1 CGGTTCAGACCGGTCAAAC
* * *
98961 CGGTTGAAAACCGGTTAAAC
1 CGGTT-CAGACCGGTCAAAC
98981 CGGTT
1 CGGTT
98986 TCCAGCAGCC
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
19 60 0.81
20 14 0.19
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.19
Consensus pattern (19 bp):
CGGTTCAGACCGGTCAAAC
Found at i:98915 original size:10 final size:10
Alignment explanation
Indices: 98885--98955 Score: 78
Period size: 10 Copynumber: 7.4 Consensus size: 10
98875 ACGGTCGGGT
98885 CGGTTCAGAC
1 CGGTTCAGAC
*
98895 CGG-TCAAAC
1 CGGTTCAGAC
98904 CGGTTCAGAC
1 CGGTTCAGAC
*
98914 CGG-TCAAAC
1 CGGTTCAGAC
98923 CGGTTCAGAC
1 CGGTTCAGAC
98933 CGG-TC-GAAC
1 CGGTTCAG-AC
*
98942 CGGTTCAGAT
1 CGGTTCAGAC
98952 CGGT
1 CGGT
98956 CGAACCGGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
8 1 0.02
9 23 0.45
10 26 0.51
11 1 0.02
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.18
Consensus pattern (10 bp):
CGGTTCAGAC
Found at i:106202 original size:22 final size:22
Alignment explanation
Indices: 106156--106222 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
106146 GAAAGTCAAC
* *
106156 GGTCAACGGTCAACGGTAGGGTCG
1 GGTCAACGGTC--GGGTCGGGTCG
106180 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
106202 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
106223 AGACCGGTCA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
22 30 0.73
24 11 0.27
ACGTcount: A:0.13, C:0.22, G:0.46, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:106212 original size:17 final size:17
Alignment explanation
Indices: 106163--106223 Score: 68
Period size: 17 Copynumber: 3.3 Consensus size: 17
106153 AACGGTCAAC
*
106163 GGTCAACGGTAGGGTCG
1 GGTCAACGGTCGGGTCG
106180 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAA----C-GGTCGGGTCG
106202 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
106219 GGTCA
1 GGTCA
106224 GACCGGTCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
17 21 0.55
18 1 0.03
21 1 0.03
22 15 0.39
ACGTcount: A:0.13, C:0.21, G:0.48, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:106243 original size:19 final size:19
Alignment explanation
Indices: 106221--106318 Score: 92
Period size: 19 Copynumber: 5.1 Consensus size: 19
106211 TCGGGTCGGG
106221 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
106240 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
106259 TC-GAACCGGTTGAAACCGG-
1 TCAG-ACCGG-TCAAACCGGT
* *
106278 TCAAACCGGTCAGAGCCGGT
1 TCAGACCGGTCA-AACCGGT
* * *
106298 TGAAAACCGGTTAAACCGGT
1 T-CAGACCGGTCAAACCGGT
106318 T
1 T
106319 TCCAGCAGCC
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
18 3 0.05
19 38 0.58
20 16 0.24
21 9 0.14
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:106249 original size:10 final size:9
Alignment explanation
Indices: 106219--106317 Score: 81
Period size: 9 Copynumber: 10.3 Consensus size: 9
106209 GGTCGGGTCG
*
106219 GGTCAGACC
1 GGTCAAACC
106228 GGTCAAACC
1 GGTCAAACC
*
106237 GGTTCAGACC
1 GG-TCAAACC
106247 GGTCAAACC
1 GGTCAAACC
*
106256 GGTTCGAACC
1 GG-TCAAACC
*
106266 GGTTGAAACC
1 GG-TCAAACC
106276 GGTCAAACC
1 GGTCAAACC
*
106285 GGTCAGAGCC
1 GGTCA-AACC
*
106295 GGTTGAAAACC
1 GG-T-CAAACC
*
106306 GGTTAAACC
1 GGTCAAACC
106315 GGT
1 GGT
106318 TTCCAGCAGC
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
9 37 0.50
10 30 0.41
11 6 0.08
12 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:106276 original size:29 final size:28
Alignment explanation
Indices: 106220--106317 Score: 115
Period size: 29 Copynumber: 3.4 Consensus size: 28
106210 GTCGGGTCGG
* * *
106220 GTCAGACCGGTCAAACCGGTTCAGACCG
1 GTCAAACCGGTCAAACCGGTTGAAACCG
*
106248 GTCAAACCGGTTCGAACCGGTTGAAACCG
1 GTCAAACCGG-TCAAACCGGTTGAAACCG
*
106277 GTCAAACCGGTCAGAGCCGGTTGAAAACCG
1 GTCAAACCGGTCA-AACCGGTTG-AAACCG
*
106307 GTTAAACCGGT
1 GTCAAACCGGT
106318 TTCCAGCAGC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
28 11 0.18
29 33 0.55
30 16 0.27
ACGTcount: A:0.28, C:0.28, G:0.29, T:0.16
Consensus pattern (28 bp):
GTCAAACCGGTCAAACCGGTTGAAACCG
Found at i:113727 original size:20 final size:20
Alignment explanation
Indices: 113702--113757 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
113692 GTGAAAGTTG
*
113702 TCCCGAAGGACCTATGTATA
1 TCCCGAAAGACCTATGTATA
* * *
113722 TCCCGAAAGATCTCTGTATG
1 TCCCGAAAGACCTATGTATA
*
113742 TCTCGAAAGACCTATG
1 TCCCGAAAGACCTATG
113758 AACCCTCGAC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (20 bp):
TCCCGAAAGACCTATGTATA
Found at i:115954 original size:24 final size:24
Alignment explanation
Indices: 115927--116045 Score: 143
Period size: 24 Copynumber: 5.0 Consensus size: 24
115917 TTCGATTTGA
*
115927 ATTCTGATTTGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
*
115951 ATTCTGATCTGATA-TATGACATGT
1 ATTCTGATCTGATACT-TGACATGG
*
115975 ATTCTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
* *
115999 ATTCTAATCTGATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
* *
116023 ATTTTGA-CATGATAATTGACATG
1 ATTCTGATC-TGATACTTGACATG
116046 AATTATGTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
23 2 0.02
24 79 0.96
25 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.40
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:118011 original size:2 final size:2
Alignment explanation
Indices: 118004--118038 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
117994 GTTATTTAAT
118004 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
118039 TCTGATTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:129995 original size:6 final size:6
Alignment explanation
Indices: 129984--130012 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
129974 AGTTACTCTG
129984 ATCAAT ATCAAT ATCAAT ATCAAT ATCAA
1 ATCAAT ATCAAT ATCAAT ATCAAT ATCAA
130013 ATAGTGGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (6 bp):
ATCAAT
Found at i:136583 original size:34 final size:34
Alignment explanation
Indices: 136540--136607 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
136530 GCAGTAAGTT
136540 GGGTTTCTCAACTACAGAAGATAGTTGCTCTCTC
1 GGGTTTCTCAACTACAGAAGATAGTTGCTCTCTC
136574 GGGTTTCTCAACTACAGAAGATAGTTGCTCTCTC
1 GGGTTTCTCAACTACAGAAGATAGTTGCTCTCTC
136608 CACAACTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (34 bp):
GGGTTTCTCAACTACAGAAGATAGTTGCTCTCTC
Found at i:137736 original size:65 final size:63
Alignment explanation
Indices: 137615--137824 Score: 221
Period size: 65 Copynumber: 3.3 Consensus size: 63
137605 TTTTTTAGAG
* * *
137615 TGATGCACCGATGCACCAATACATGCATCGATGCAC-CATGA-ATTAAATTG-AACATCGAATGC
1 TGATGCATCGATGCA-C-AGACATGCATCGATGCACTCAGGATATT---TTGAAACATCGAATGC
137677 ATT
61 ATT
* * *
137680 TCATGCATCGATGCACATACCATGCATCGATGCACTGAGGAT-TTTATGAAACCATCGAATGCAT
1 TGATGCATCGATGCACAGA-CATGCATCGATGCACTCAGGATATTT-TGAAA-CATCGAATGCAT
137744 T
63 T
* * * *
137745 TGATGTATCGATGCACCAGACATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACT
1 TGATGCATCGATGCA-CAGACATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
137809 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
137825 TCTTAGTGCA
Statistics
Matches: 125, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
62 1 0.01
63 6 0.05
64 44 0.35
65 68 0.54
66 6 0.05
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (63 bp):
TGATGCATCGATGCACAGACATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
Found at i:145309 original size:2 final size:2
Alignment explanation
Indices: 145297--145335 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
145287 TTTGAACTTA
145297 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
145336 TTGGTTTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:146119 original size:45 final size:46
Alignment explanation
Indices: 146027--146134 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 46
146017 TGCACATACC
** *
146027 ATGCATCGATGCACTGAGGATTTTATGAAAACATCGAATGCATTTG
1 ATGCATCGATGCACTCTGGATTTTATGAAAACATCGAATGCACTTG
*
146073 ATGCATCGATGCACTCTGGCTATTT-TG-AAACATCGAATGCACTTG
1 ATGCATCGATGCACTCTGGAT-TTTATGAAAACATCGAATGCACTTG
*
146118 ATGCATCAATGCACTCT
1 ATGCATCGATGCACTCT
146135 TAGTTCACCG
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
45 33 0.59
46 20 0.36
47 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (46 bp):
ATGCATCGATGCACTCTGGATTTTATGAAAACATCGAATGCACTTG
Found at i:149209 original size:2 final size:2
Alignment explanation
Indices: 149204--149237 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
149194 TTTTTTAAAC
149204 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
149238 GTGTGTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:154321 original size:21 final size:21
Alignment explanation
Indices: 154297--154358 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
154287 TTTTTTATCA
*
154297 AAAATATTTATTTTAGATAAT
1 AAAATATATATTTTAGATAAT
*
154318 AAAAT-TAATATTTTTGATAA-
1 AAAATAT-ATATTTTAGATAAT
*
154338 AAAATA-ATATTTTATATAAT
1 AAAATATATATTTTAGATAAT
154358 A
1 A
154359 TTATCAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
19 11 0.32
20 7 0.21
21 16 0.47
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (21 bp):
AAAATATATATTTTAGATAAT
Found at i:154345 original size:19 final size:19
Alignment explanation
Indices: 154277--154350 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 19
154267 AACGTTACTT
* * *
154277 AAAATATTATTTTTTTATCA
1 AAAATAATA-TTTTTGATAA
* *
154297 AAAATATTTATTTTAGATAA
1 AAAATA-ATATTTTTGATAA
154317 TAAAATTAATATTTTTGATAA
1 -AAAA-TAATATTTTTGATAA
154338 AAAATAATATTTT
1 AAAATAATATTTT
154351 ATATAATATT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
19 9 0.20
20 17 0.37
21 18 0.39
22 2 0.04
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (19 bp):
AAAATAATATTTTTGATAA
Found at i:154356 original size:19 final size:19
Alignment explanation
Indices: 154277--154356 Score: 63
Period size: 20 Copynumber: 4.0 Consensus size: 19
154267 AACGTTACTT
* * *
154277 AAAATATTATTTTTTTATCA
1 AAAATAATA-TTTTATATAA
* *
154297 AAAATATTTATTTTAGATAA
1 AAAATA-ATATTTTATATAA
154317 TAAAATTAATATTTT-TGATAA
1 -AAAA-TAATATTTTAT-ATAA
154338 AAAATAATATTTTATATAA
1 AAAATAATATTTTATATAA
154357 TATTATCAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
19 13 0.26
20 18 0.36
21 17 0.34
22 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (19 bp):
AAAATAATATTTTATATAA
Found at i:164804 original size:29 final size:29
Alignment explanation
Indices: 164761--164843 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
164751 CTCACCTAAC
*
164761 TAAATTGATGTAAGCAATGATATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
164791 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
164820 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
164844 ATTTAGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 45 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.34
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:168232 original size:15 final size:15
Alignment explanation
Indices: 168212--168241 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
168202 CTTTCTCATA
168212 GTTATTGTTGGAATT
1 GTTATTGTTGGAATT
*
168227 GTTATTGTTGTAATT
1 GTTATTGTTGGAATT
168242 CCAGCCTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (15 bp):
GTTATTGTTGGAATT
Found at i:169573 original size:29 final size:29
Alignment explanation
Indices: 169530--169612 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
169520 CTCACCTAAC
*
169530 TAAATTGATGTAAGCAATGATATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
169560 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
169589 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
169613 ATTTAGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 45 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.34
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:178337 original size:20 final size:21
Alignment explanation
Indices: 178282--178343 Score: 117
Period size: 21 Copynumber: 3.0 Consensus size: 21
178272 AGTTTATTTT
178282 TAAACTTTGTTTCAATTATCG
1 TAAACTTTGTTTCAATTATCG
178303 TAAACTTTGTTTCAATTATCG
1 TAAACTTTGTTTCAATTATCG
178324 TAAACTTT-TTTCAATTATCG
1 TAAACTTTGTTTCAATTATCG
178344 AACTTGAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
20 12 0.29
21 29 0.71
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (21 bp):
TAAACTTTGTTTCAATTATCG
Found at i:178380 original size:33 final size:32
Alignment explanation
Indices: 178332--178408 Score: 118
Period size: 33 Copynumber: 2.4 Consensus size: 32
178322 CGTAAACTTT
*
178332 TTTCAATTATCGAACTTGAAAGTTTTTAAGTA
1 TTTCAATTATCGAACTTGAAAGTATTTAAGTA
* *
178364 TTTGAATTTATCGAACTTGGAAGTATTTAAGTA
1 TTTCAA-TTATCGAACTTGAAAGTATTTAAGTA
178397 TTTCAATTATCG
1 TTTCAATTATCG
178409 TAAACTTTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 11 0.28
33 29 0.73
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.44
Consensus pattern (32 bp):
TTTCAATTATCGAACTTGAAAGTATTTAAGTA
Found at i:178908 original size:16 final size:15
Alignment explanation
Indices: 178883--178912 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
178873 TTAAGATCCG
178883 AATCGATTTTTTTAA
1 AATCGATTTTTTTAA
178898 AATCTGATTTTTTTA
1 AATC-GATTTTTTTA
178913 CTAGGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (15 bp):
AATCGATTTTTTTAA
Found at i:182488 original size:106 final size:106
Alignment explanation
Indices: 182303--182832 Score: 898
Period size: 106 Copynumber: 5.0 Consensus size: 106
182293 CAATGCAAGC
* * * * * *
182303 TGCGTTGTTTTGAGGCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG
1 TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
*
182368 TTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
66 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
182409 TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
1 TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
182474 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
66 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
* * *
182515 TGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTATGATATTGGGAAATTG
1 TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
182580 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
66 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
* * ** * *
182621 TGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTAAGAAGTTA
1 TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
* *
182686 TTTGTTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
66 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
182727 TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
1 TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
182792 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
66 TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
182833 GGATTTGTTT
Statistics
Matches: 397, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 397 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
TGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGATATTGGGAAATTG
TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
Found at i:190103 original size:21 final size:21
Alignment explanation
Indices: 190079--190137 Score: 84
Period size: 21 Copynumber: 2.8 Consensus size: 21
190069 TCACCGCTTC
190079 CATATCAAATGCCACCATAGT-
1 CATATCAAATGCCACCATA-TA
*
190100 CATATTAAATGCCACCATATA
1 CATATCAAATGCCACCATATA
*
190121 CATATCAGATGCCACCA
1 CATATCAAATGCCACCA
190138 CCGCATAGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 1 0.03
21 33 0.97
ACGTcount: A:0.39, C:0.29, G:0.08, T:0.24
Consensus pattern (21 bp):
CATATCAAATGCCACCATATA
Found at i:192789 original size:65 final size:65
Alignment explanation
Indices: 192714--192843 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
192704 AAGTTAAAAT
192714 CTGTATTGTATTTCACACTTATGATCAGCAAGGAGCGGGTGTTGCCCAAAAGCTTTTATCTCCTC
1 CTGTATTGTATTTCACACTTATGATCAGCAAGGAGCGGGTGTTGCCCAAAAGCTTTTATCTCCTC
192779 CTGTATTGTATTTCACACTTATGATCAGCAAGGAGCGGGTGTTGCCCAAAAGCTTTTATCTCCTC
1 CTGTATTGTATTTCACACTTATGATCAGCAAGGAGCGGGTGTTGCCCAAAAGCTTTTATCTCCTC
192844 AATGCGGGGT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (65 bp):
CTGTATTGTATTTCACACTTATGATCAGCAAGGAGCGGGTGTTGCCCAAAAGCTTTTATCTCCTC
Found at i:195436 original size:29 final size:29
Alignment explanation
Indices: 195390--195472 Score: 103
Period size: 29 Copynumber: 2.8 Consensus size: 29
195380 CTCACCTAAC
* * *
195390 TAAATTGATGTAAGCAATGATATCATTACT
1 TAAA-TGATGTAAACAATGACATCATTAAT
*
195420 TAAATGATGTAAACAATGACATCTTTAAT
1 TAAATGATGTAAACAATGACATCATTAAT
**
195449 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAACAATGACATCA
195473 ATTTAGTTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 42 0.91
30 4 0.09
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (29 bp):
TAAATGATGTAAACAATGACATCATTAAT
Found at i:199003 original size:14 final size:12
Alignment explanation
Indices: 198964--198991 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
198954 AAACTCATGA
198964 TTCTTCTTATGC
1 TTCTTCTTATGC
198976 TTCTTCTTATGC
1 TTCTTCTTATGC
198988 TTCT
1 TTCT
198992 CTTTGTATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.07, T:0.61
Consensus pattern (12 bp):
TTCTTCTTATGC
Found at i:200126 original size:29 final size:29
Alignment explanation
Indices: 200083--200165 Score: 112
Period size: 29 Copynumber: 2.8 Consensus size: 29
200073 CTCACCTAAC
*
200083 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
* *
200113 TAAATGATATAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
* *
200142 TAAATGATGTAAGTAATGGCATCA
1 TAAATGATGTAAGCAATGACATCA
200166 ATGTAGTTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 42 0.91
30 4 0.09
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:200986 original size:21 final size:21
Alignment explanation
Indices: 200952--200995 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
200942 TCAGCAGTTG
*
200952 ATAATTAATACTTTTTTATATT
1 ATAATTAATACTTTTATAT-TT
*
200974 ATAA-TAATTCTTTTATATTT
1 ATAATTAATACTTTTATATTT
200994 AT
1 AT
200996 TTAACAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
ATAATTAATACTTTTATATTT
Found at i:204649 original size:6 final size:6
Alignment explanation
Indices: 204634--204785 Score: 286
Period size: 6 Copynumber: 25.3 Consensus size: 6
204624 ATTTATTTAT
* *
204634 GTATAC GTATAG GTATAG GTATAG GTATAG GTTTAG GTATAG GTATAG
1 GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG
204682 GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG
1 GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG
204730 GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG
1 GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG GTATAG
204778 GTATAG GT
1 GTATAG GT
204786 GATGTTTAAC
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 143 1.00
ACGTcount: A:0.32, C:0.01, G:0.33, T:0.34
Consensus pattern (6 bp):
GTATAG
Found at i:205891 original size:14 final size:13
Alignment explanation
Indices: 205851--205900 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 13
205841 TTTTTGTATT
*
205851 AAATAATATTAAA
1 AAATAATAATAAA
205864 AATATCACATAATAAA
1 AA-AT-A-ATAATAAA
205880 ATAATAATAATAAA
1 A-AATAATAATAAA
205894 AAATAAT
1 AAATAAT
205901 TTAAAGTGAC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
13 8 0.25
14 11 0.34
15 2 0.06
16 10 0.31
17 1 0.03
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATAATAATAAA
Found at i:217468 original size:2 final size:2
Alignment explanation
Indices: 217463--217492 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
217453 TAAAAAAATG
217463 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
217493 TAATATTGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:219088 original size:3 final size:3
Alignment explanation
Indices: 219082--219110 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
219072 ACAACAACAA
219082 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
219111 AGAAACAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:220718 original size:21 final size:20
Alignment explanation
Indices: 220689--220728 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
220679 TTTTTCAAAA
*
220689 TAATATTTTGAGATATAATTT
1 TAATATTTTCA-ATATAATTT
*
220710 TAATTTTTTCAATATAATT
1 TAATATTTTCAATATAATT
220729 GCTTGGTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (20 bp):
TAATATTTTCAATATAATTT
Found at i:221049 original size:2 final size:2
Alignment explanation
Indices: 221042--221079 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
221032 AGAAAAAGAT
221042 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
221080 ATTTGAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:228401 original size:22 final size:23
Alignment explanation
Indices: 228351--228412 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
228341 GATTCCCCTG
228351 GGGGGAAATCGGTTCCCCTTCAAA
1 GGGGG-AATCGGTTCCCCTTCAAA
*
228375 GGGGGAATCGGTTCCCCTT-TAA
1 GGGGGAATCGGTTCCCCTTCAAA
* *
228397 GGGGGTATCGATTCCC
1 GGGGGAATCGGTTCCC
228413 TCTGCCCTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 16 0.46
23 14 0.40
24 5 0.14
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (23 bp):
GGGGGAATCGGTTCCCCTTCAAA
Found at i:232012 original size:22 final size:21
Alignment explanation
Indices: 231970--232009 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
231960 GAGTTTATTT
*
231970 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTAAAATA
231991 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
232010 ATAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:254923 original size:3 final size:3
Alignment explanation
Indices: 254909--254946 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
254899 GAATCTGAGC
*
254909 AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
254947 TCTAACGCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:258284 original size:28 final size:28
Alignment explanation
Indices: 258240--258301 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
258230 CAAGAGCTTC
258240 AAAGCATGAAAAAAAGGATCAGAAACTA
1 AAAGCATGAAAAAAAGGATCAGAAACTA
*
258268 AAAGCATGAAAACAAGGATCAGAAACTA
1 AAAGCATGAAAAAAAGGATCAGAAACTA
258296 AAAGCA
1 AAAGCA
258302 GGAAGTTGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.60, C:0.13, G:0.18, T:0.10
Consensus pattern (28 bp):
AAAGCATGAAAAAAAGGATCAGAAACTA
Found at i:260799 original size:3 final size:3
Alignment explanation
Indices: 260791--260817 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
260781 CTATAATTAG
260791 CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT
260818 GAGCTTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:270358 original size:2 final size:2
Alignment explanation
Indices: 270351--270384 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
270341 TGAATGGTAC
270351 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
270385 ACCATTGGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:296714 original size:2 final size:2
Alignment explanation
Indices: 296707--296731 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
296697 ACTAAATGAA
296707 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
296732 AACAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:303276 original size:21 final size:22
Alignment explanation
Indices: 303242--303291 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
303232 TTGGCCACTG
*
303242 AATTAGACTTAAAT-TTTATTATA
1 AATTA-ACTTAAATATATATT-TA
303265 AATTAAC-TAAATATATATTTA
1 AATTAACTTAAATATATATTTA
303286 AATTAA
1 AATTAA
303292 TCAAATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 13 0.52
22 7 0.28
23 5 0.20
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (22 bp):
AATTAACTTAAATATATATTTA
Found at i:305454 original size:29 final size:29
Alignment explanation
Indices: 305412--305469 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
305402 GAAAAGAAAA
305412 GAAGTTGGACACTGACTACAGCTATTGGT
1 GAAGTTGGACACTGACTACAGCTATTGGT
*
305441 GAAGTTGGATACTGACTACAGCTATTGGT
1 GAAGTTGGACACTGACTACAGCTATTGGT
305470 TAAGGATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
GAAGTTGGACACTGACTACAGCTATTGGT
Found at i:309746 original size:33 final size:32
Alignment explanation
Indices: 309701--309823 Score: 129
Period size: 33 Copynumber: 3.8 Consensus size: 32
309691 CGTCCAACAC
* *
309701 CGCCTAGAGCCGAGGCCGCCGCACACCAAGGAT
1 CGCCTAGGGCCGAGACCGCCGCACACCAAGG-T
* **
309734 CGTCTAGGGCCGAGATTGCCGCACACCAAGGGT
1 CGCCTAGGGCCGAGACCGCCGCACACCAA-GGT
* *
309767 CGCCTAGGGCCGAGATCGTCGCACACCAAGTGT
1 CGCCTAGGGCCGAGACCGCCGCACACCAAG-GT
* * *
309800 CACCTAGGGCCGAGGCCGACGCAC
1 CGCCTAGGGCCGAGACCGCCGCAC
309824 GTCAAGATCT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
32 1 0.01
33 73 0.96
34 2 0.03
ACGTcount: A:0.22, C:0.36, G:0.32, T:0.11
Consensus pattern (32 bp):
CGCCTAGGGCCGAGACCGCCGCACACCAAGGT
Done.