genome.fa.s3492.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003492.1 Hibiscus syriacus cultivar Beakdansim tig00007388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104441

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4311--4400	43	2.1	43	91	0	144	23	21	5	50	1.70
5206--6013	201	4.0	201	84	3	1043	42	12	12	32	1.81
5729--5767	21	1.9	21	94	5	71	35	10	10	43	1.73
5826--6167	178	1.9	179	89	1	526	42	13	11	33	1.80
7342--7380	21	1.9	20	89	5	60	38	10	10	41	1.73
7031--8957	203	9.6	199	78	8	1601	39	13	13	34	1.83
7988--8036	21	2.3	21	96	0	89	48	10	10	30	1.70
7404--8361	200	4.8	195	78	8	631	39	12	13	34	1.82
8397--8454	21	2.8	21	94	0	98	43	18	15	22	1.88
8009--8966	199	4.7	197	72	12	559	38	13	14	33	1.85
9181--9584	118	3.5	117	72	13	368	31	14	13	40	1.85
9165--9774	226	2.7	225	85	2	785	32	13	12	40	1.83
12999--13027	14	2.0	15	93	6	51	41	0	0	58	0.98
32469--32520	20	2.6	20	100	0	104	30	19	19	30	1.96
34522--34558	19	1.9	19	88	0	56	40	8	16	35	1.78
40388--40435	25	1.9	25	87	8	71	45	6	20	27	1.75
50396--50461	19	3.4	19	79	8	71	1	19	9	69	1.23
50941--51011	3	23.7	3	91	0	115	61	0	4	33	1.15
51330--51988	113	5.9	113	93	0	1108	27	20	14	38	1.91
52644--52968	83	3.9	83	92	2	530	36	23	12	28	1.90
53890--53998	1	109.0	1	81	0	128	0	9	0	90	0.44
53890--53992	30	3.5	30	90	5	165	0	8	0	91	0.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53896--53998	50	2.1	50	90	3	163	0	8	0	91	0.43
53890--53998	29	3.6	30	91	6	168	0	9	0	90	0.44
66678--66729	3	17.7	3	88	11	81	65	0	0	34	0.93
67002--67043	22	1.9	22	85	9	59	42	0	0	57	0.99
71293--71331	17	2.3	18	82	13	55	71	10	0	17	1.12
79811--79872	32	2.0	32	87	3	90	40	8	0	51	1.31
80016--80093	31	2.5	31	89	0	129	21	25	16	35	1.94
80354--80428	31	2.4	31	86	0	105	24	24	16	36	1.94
82957--83086	31	4.2	31	93	0	206	23	30	15	31	1.95
83625--83684	20	3.3	19	69	26	58	51	6	1	40	1.38
83622--83693	34	2.1	34	94	0	126	54	8	1	36	1.39
83638--83691	18	3.1	18	72	17	60	53	9	0	37	1.33
83639--83694	16	3.4	16	72	18	60	55	8	0	35	1.31
83862--83902	22	1.9	22	95	5	75	63	0	0	36	0.95
84441--84467	14	1.9	14	100	0	54	44	7	7	40	1.60
88483--88554	26	2.8	26	100	0	144	48	25	0	26	1.51
88535--88675	36	3.9	36	90	3	221	58	17	5	19	1.58
88535--88675	72	2.0	72	95	0	255	58	17	5	19	1.58
88649--88692	21	2.0	22	86	4	63	54	11	11	22	1.68
88647--88699	19	2.6	20	79	8	63	52	13	9	24	1.69
99784--99827	5	8.6	5	90	5	52	20	6	2	70	1.21
102789--102888	50	2.0	50	88	7	150	33	22	9	36	1.85

Tables:   1

The End!