Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003493.1 Hibiscus syriacus cultivar Beakdansim tig00007389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83730

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18795--18838
20
2.2
20
95
0
79
22
0
22
54
1.45
22322--22377
19
3.2
19
65
19
57
33
17
7
41
1.77
22451--22511
2
30.5
2
100
0
122
49
0
0
50
1.00
22649--22720
23
3.1
23
63
21
60
50
1
8
40
1.41
24245--24319
2
37.5
2
100
0
150
50
0
0
49
1.00
26826--26879
20
2.5
21
82
17
67
46
0
5
48
1.25
26826--26878
21
2.5
20
77
20
54
47
0
5
47
1.26
31506--31537
1
32.0
1
100
0
64
100
0
0
0
0.00
44593--44693
15
7.4
14
67
28
58
77
0
13
7
1.04
44594--44693
14
7.3
13
69
26
57
77
1
14
8
1.05
44595--44693
33
2.9
34
81
13
123
77
1
13
8
1.03
44651--44693
20
2.2
20
87
8
61
76
0
13
9
1.01
45562--45914
136
2.6
136
90
0
555
35
17
21
24
1.95
45832--46001
91
1.9
87
85
7
234
41
15
18
24
1.89
46049--46113
20
3.3
20
67
18
55
44
12
21
21
1.85
45923--46231
117
2.7
113
87
6
416
39
15
20
24
1.91
46768--46801
1
34.0
1
100
0
68
100
0
0
0
0.00
49595--49844
129
1.9
129
91
1
412
28
22
14
34
1.94
50792--50841
16
3.2
16
82
2
57
60
18
8
14
1.58
52030--52084
12
4.8
12
76
13
62
1
36
12
49
1.52
53103--53136
17
2.0
17
94
0
59
35
32
17
14
1.91
53649--53682
15
2.3
15
89
0
50
38
0
20
41
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55115--55176
16
3.9
16
77
8
63
50
22
11
16
1.76
55535--55576
22
1.9
22
85
0
57
35
0
2
61
1.09
56293--56365
32
2.3
32
83
4
94
39
13
13
32
1.84
56305--56378
32
2.3
32
80
0
85
43
17
12
27
1.84
56658--56705
21
2.3
21
96
0
87
41
12
18
27
1.86
61307--61354
21
2.3
21
96
0
87
41
12
18
27
1.86
62975--63013
16
2.5
15
84
12
51
58
15
5
20
1.55
64177--64252
12
6.8
12
70
17
65
2
36
13
47
1.56
64182--64237
21
2.7
21
97
0
103
3
37
12
46
1.59
65206--65241
17
2.1
17
94
0
63
36
33
16
13
1.89
66093--66342
129
1.9
129
92
1
421
27
23
14
34
1.94
67040--67084
21
2.1
21
88
8
65
28
2
4
64
1.25
67281--67342
16
3.9
16
77
8
63
50
22
11
16
1.76
68438--68515
32
2.4
32
78
4
86
39
14
12
33
1.84
68826--68861
19
1.9
18
88
5
54
75
0
22
2
0.94
70328--70377
16
3.2
16
85
2
66
58
18
8
16
1.62
71545--71637
10
9.0
11
73
20
69
2
36
12
48
1.54
71550--71622
21
3.6
21
92
5
107
2
36
12
47
1.55
72652--72696
17
2.6
17
85
0
63
35
35
15
13
1.87
74212--74489
139
2.0
140
91
2
452
58
4
11
25
1.51
76006--76559
105
5.3
104
92
3
823
23
18
24
34
1.96
77296--77414
60
2.0
61
85
8
163
11
26
12
48
1.75

Tables:   1

The End!