genome.fa.s3495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003495.1 Hibiscus syriacus cultivar Beakdansim tig00007391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79919

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6712--6742	2	15.5	2	100	0	62	51	0	0	48	1.00
7019--7070	25	2.1	25	100	0	104	50	15	11	23	1.76
7025--7079	25	2.2	25	90	0	83	54	12	9	23	1.66
7535--7567	17	1.9	17	93	0	57	27	18	21	33	1.96
7711--7794	41	2.1	40	86	4	116	26	15	21	36	1.93
11941--11979	21	1.9	20	89	5	60	23	0	5	71	1.05
13735--13799	31	2.2	31	83	8	82	38	4	23	33	1.75
15400--15440	18	2.3	18	100	0	82	48	0	9	41	1.36
18432--18553	46	2.6	48	77	6	124	21	0	55	22	1.43
18577--19085	48	10.7	46	69	16	157	19	4	46	28	1.70
18523--18702	93	1.9	93	86	2	254	18	7	46	28	1.75
18567--18702	45	3.0	44	67	20	107	18	7	44	30	1.77
18577--18850	143	1.9	140	82	3	334	20	4	47	27	1.70
18717--18931	96	2.2	96	83	4	256	21	3	48	26	1.65
18825--19508	147	4.5	146	81	7	735	18	5	46	30	1.71
19116--19231	48	2.4	47	82	5	126	22	3	46	27	1.68
19154--19333	99	1.8	99	80	7	222	18	3	46	31	1.67
19366--19492	48	2.6	48	86	2	166	14	5	46	33	1.67
19418--19492	24	3.1	24	63	21	57	16	5	49	29	1.67
19202--19603	162	2.5	162	89	2	581	17	6	44	31	1.74
19414--19663	114	2.2	114	85	5	319	18	7	45	28	1.76
19614--19699	36	2.4	36	86	3	111	17	6	44	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19503--20113	150	4.1	150	91	0	936	18	9	42	30	1.81
19757--19849	36	2.6	36	84	3	107	16	4	45	34	1.67
19908--19999	36	2.6	36	87	3	123	19	9	43	27	1.82
21284--21562	51	5.6	49	70	12	165	16	9	43	30	1.80
21281--22470	99	12.1	99	88	1	1432	17	8	44	29	1.78
22245--22470	93	2.4	95	87	2	303	19	8	43	28	1.80
22410--22545	54	2.7	49	75	9	130	22	7	46	23	1.77
22408--22526	54	2.2	54	86	0	157	21	6	49	22	1.72
22891--22935	22	2.0	22	86	8	63	53	0	2	44	1.13
24278--24311	2	17.0	2	100	0	68	50	0	0	50	1.00
24783--24825	21	2.1	20	86	4	59	25	18	27	27	1.98
27590--27614	11	2.3	11	100	0	50	44	0	0	56	0.99
27584--27621	19	2.0	20	89	5	60	47	0	0	52	1.00
28210--28235	2	13.0	2	100	0	52	50	0	0	50	1.00
28459--28489	2	15.5	2	100	0	62	0	48	0	51	1.00
30849--30908	22	2.7	22	92	0	102	33	21	23	21	1.97
30854--30923	22	3.1	22	81	6	79	32	21	20	25	1.97
31046--31071	2	13.0	2	100	0	52	50	0	0	50	1.00
31250--31284	2	17.5	2	100	0	70	48	0	0	51	1.00
33014--33064	2	25.5	2	100	0	102	50	0	0	49	1.00
36520--36550	4	7.8	4	100	0	62	77	0	0	22	0.77
37351--37386	2	18.5	2	94	5	65	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41713--41775	29	2.1	30	88	2	92	46	14	6	33	1.70
43148--43211	22	2.9	22	81	4	76	18	25	29	26	1.98
53920--53979	20	3.1	19	78	4	57	53	1	1	43	1.20
53912--54302	186	2.1	185	91	0	622	43	2	8	46	1.47
54936--54973	11	3.5	11	100	0	76	15	26	10	47	1.78
60912--60950	18	2.2	18	86	9	53	61	0	15	23	1.33
60999--61230	36	6.7	34	72	19	146	43	6	3	45	1.49
61008--61215	69	3.0	70	75	14	198	42	7	4	45	1.51
61182--61289	39	2.8	38	75	9	103	44	5	6	43	1.53
62031--62932	106	8.5	106	96	0	1599	23	18	24	34	1.96
66786--66814	11	2.6	11	100	0	58	93	0	0	6	0.36
68044--68082	18	2.2	18	86	9	53	61	0	15	23	1.33
68139--68362	36	6.5	34	71	20	141	42	7	4	45	1.50
68188--68408	109	2.0	105	79	11	225	42	5	5	46	1.51

Tables:   1

The End!