genome.fa.s3496.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003496.1 Hibiscus syriacus cultivar Beakdansim tig00007392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159022

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9625--9668	16	2.8	16	78	0	52	43	9	13	34	1.76
10517--10644	57	2.2	57	86	5	170	45	17	13	23	1.84
10759--11276	56	9.3	56	77	8	376	47	14	10	26	1.77
10955--11038	30	3.0	26	67	16	69	45	14	10	29	1.78
12348--12409	21	2.9	22	83	7	92	16	35	20	27	1.94
12351--12424	21	3.5	21	78	10	80	14	37	20	27	1.92
17494--17539	23	2.0	23	87	8	67	56	13	2	28	1.48
31559--31706	72	2.1	72	100	0	296	30	19	16	33	1.94
32094--32360	133	2.0	132	87	6	400	38	5	6	50	1.51
32779--32820	2	21.0	2	100	0	84	50	0	0	50	1.00
33185--33227	2	21.0	2	95	4	77	48	0	2	48	1.14
33958--33992	16	2.1	17	89	5	54	22	11	11	54	1.68
41491--41558	35	1.9	35	90	0	109	32	0	22	45	1.52
43987--44034	16	2.9	16	77	22	55	27	4	0	68	1.07
55349--55373	1	25.0	1	100	0	50	100	0	0	0	0.00
55565--56076	105	4.9	105	96	1	922	32	25	19	22	1.97
56149--56190	20	2.1	20	100	0	84	26	19	16	38	1.92
57629--57666	8	5.0	8	87	9	53	39	0	7	52	1.31
62227--62294	29	2.3	29	84	0	82	41	23	7	27	1.81
62247--62352	29	3.7	29	85	0	131	43	23	7	25	1.80
62360--62412	18	3.0	18	88	2	72	18	20	43	16	1.88
69206--69298	47	2.0	47	100	0	186	32	11	17	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82790--82845	29	1.9	29	85	0	76	41	7	16	35	1.75
86351--86390	2	20.0	2	100	0	80	50	0	0	50	1.00
88646--88677	2	16.0	2	100	0	64	50	0	0	50	1.00
89136--89171	19	1.9	18	88	5	54	33	8	5	52	1.55
96786--96998	35	6.1	34	81	9	157	25	22	21	30	1.98
96787--96945	23	6.8	23	85	6	130	23	22	23	31	1.98
96848--96981	23	5.7	23	81	6	144	24	22	20	32	1.97
96788--96992	58	3.5	57	82	4	212	25	22	21	30	1.99
96951--97000	12	4.2	12	70	14	50	32	22	18	28	1.97
97840--97864	12	2.1	12	100	0	50	60	24	0	16	1.36
98688--98767	35	2.3	35	97	0	151	48	18	6	26	1.71
99019--99075	21	2.7	21	77	20	57	52	26	0	21	1.47
99060--99234	35	4.8	35	81	9	179	45	30	0	24	1.54
99063--99122	7	8.6	7	70	7	50	41	38	0	20	1.52
99098--99283	42	4.6	42	84	7	217	45	29	0	25	1.54
99365--99476	42	2.7	42	78	10	113	47	31	0	21	1.51
99366--99468	7	14.7	7	68	11	52	46	32	0	21	1.52
99366--99481	28	4.1	27	65	22	60	47	30	0	22	1.52
99982--100022	14	3.1	14	76	20	52	41	0	4	53	1.22
100492--100538	12	3.7	12	81	15	58	46	17	19	17	1.84
102833--102872	21	1.9	21	94	0	71	30	15	7	47	1.72
102867--102966	33	3.0	33	91	2	148	33	7	14	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102952--103006	13	4.2	13	75	13	58	34	3	12	49	1.59
103404--103459	15	3.6	15	79	9	67	32	12	12	42	1.80
103423--103456	18	1.9	18	94	5	61	38	11	11	38	1.79
103550--103581	16	2.0	17	88	11	50	43	21	21	12	1.86
105698--105722	12	2.1	12	100	0	50	24	0	8	68	1.16
107724--107758	17	2.1	16	89	5	52	57	5	0	37	1.23
110205--110248	10	4.1	10	78	16	52	63	15	11	9	1.51
111466--111490	12	2.1	12	100	0	50	44	32	8	16	1.76
111901--111957	24	2.3	25	85	8	73	49	0	10	40	1.37
119131--119205	10	7.7	10	67	21	52	57	20	13	9	1.63
119135--119199	16	4.1	16	95	0	112	56	21	13	7	1.62
121060--121114	23	2.4	22	75	6	56	58	1	3	36	1.26
124911--124948	18	2.0	20	85	10	53	42	7	23	26	1.81
132490--132893	68	6.1	68	84	8	557	45	14	11	28	1.79
132490--132893	129	3.1	129	90	2	610	45	14	11	28	1.79
135023--135290	68	4.2	66	84	9	358	30	12	14	42	1.82
135023--135290	129	2.1	129	92	0	455	30	12	14	42	1.82
135571--135974	68	6.1	68	84	8	566	44	13	11	29	1.80
135571--135974	129	3.1	129	91	2	637	44	13	11	29	1.80
144163--144200	20	1.9	20	94	0	67	31	0	0	68	0.90
151474--151507	15	2.4	14	90	5	50	50	0	5	44	1.26
153314--153436	61	2.0	61	84	3	158	33	17	4	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154377--154420	15	2.8	15	86	6	61	50	0	0	50	1.00
155636--155663	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!