Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003497.1 Hibiscus syriacus cultivar Beakdansim tig00007395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74679

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
419--475
4
15.0
4
78
10
66
28
3
24
43
1.70
4209--4263
2
28.0
2
85
3
76
43
0
5
50
1.25
5983--6018
18
2.0
18
100
0
72
33
33
0
33
1.58
16774--16826
22
2.4
22
93
0
97
16
16
28
37
1.91
16872--17011
41
3.5
41
95
1
239
21
19
22
37
1.95
16884--16990
21
5.2
21
71
4
101
22
18
24
34
1.96
16999--17052
22
2.5
22
93
0
99
16
16
27
38
1.90
17168--17226
6
10.8
6
81
18
76
33
49
16
0
1.47
17168--17221
28
2.1
25
80
13
56
35
48
16
0
1.47
17701--17731
5
6.4
5
92
7
55
0
38
22
38
1.54
17824--17895
21
3.4
21
73
7
65
34
26
15
23
1.94
17863--17939
21
3.7
21
78
3
102
33
27
18
20
1.96
17887--17963
20
3.8
20
77
3
91
38
22
22
16
1.93
17866--17959
41
2.3
41
98
0
179
36
24
20
19
1.95
24404--24607
75
2.7
76
87
3
279
20
24
31
23
1.98
25200--25243
17
2.6
17
85
7
63
56
29
0
13
1.38
25193--25246
9
6.6
8
76
19
58
61
25
0
12
1.32
27163--27223
21
2.9
21
73
9
70
13
24
40
21
1.88
27163--27225
20
3.0
20
76
4
63
12
25
39
22
1.89
32998--33204
74
2.7
76
85
5
267
20
24
32
22
1.98
33434--33466
2
17.5
2
87
12
52
48
0
0
51
1.00
34127--34194
27
2.5
26
80
4
73
41
1
4
52
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38686--38739
18
3.0
18
97
0
99
22
20
27
29
1.98
40249--40581
111
3.0
111
95
0
585
45
10
7
36
1.66
40859--40964
50
2.1
50
85
3
151
23
29
31
16
1.96
41102--41135
5
7.2
5
87
12
54
20
0
0
79
0.73
41106--41218
9
12.2
9
70
16
63
20
6
1
71
1.16
41199--41259
24
2.6
24
80
14
74
24
4
0
70
1.07
41800--41825
2
13.0
2
100
0
52
50
0
0
50
1.00
44641--44782
70
2.0
70
98
0
275
28
25
14
30
1.95
47116--47641
263
2.0
263
98
0
1025
31
19
22
26
1.98
48232--48271
21
2.0
19
90
9
62
47
22
0
30
1.52
48266--48315
21
2.4
20
77
9
55
42
34
0
24
1.55
48273--48312
21
1.9
22
85
10
57
42
32
0
25
1.55
54480--54517
18
2.1
18
100
0
76
36
0
15
47
1.46
60214--60260
23
2.1
21
92
7
76
40
10
17
31
1.83
61555--61584
12
2.5
12
94
0
51
10
13
43
33
1.77

Tables:   1

The End!