genome.fa.s3499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003499.1 Hibiscus syriacus cultivar Beakdansim tig00007397_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51908

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3479--3540	15	4.1	15	100	0	124	33	32	19	14	1.92
3636--3702	29	2.3	29	100	0	134	16	20	16	46	1.84
3714--3760	12	3.9	12	94	0	76	38	23	2	36	1.67
4069--4245	64	2.8	63	84	1	201	24	18	22	33	1.96
4069--4293	64	3.5	64	81	5	197	26	19	20	33	1.96
7889--8046	21	7.8	20	72	7	86	38	25	17	18	1.92
8052--8261	40	5.3	40	88	2	264	35	24	18	20	1.95
8013--8261	20	12.5	20	83	4	234	37	24	18	19	1.94
11503--11600	19	5.4	19	82	13	134	14	21	17	46	1.83
11484--11600	53	2.2	53	95	1	218	13	23	17	45	1.84
11677--11731	14	3.6	14	73	21	56	45	20	23	10	1.82
11659--11787	33	3.8	33	91	7	188	44	17	23	13	1.85
11659--11844	19	10.6	19	77	18	206	44	17	22	15	1.87
11659--11844	89	2.1	85	91	4	291	44	17	22	15	1.87
11851--11950	19	5.5	19	84	12	147	15	23	17	45	1.85
11834--11950	53	2.2	53	95	1	209	14	24	17	43	1.86
12057--12093	14	2.6	14	91	0	65	45	21	0	32	1.52
14064--14119	14	3.7	14	80	17	67	44	23	21	10	1.83
14045--14136	32	2.8	33	91	3	159	46	21	20	10	1.81
14008--14141	19	7.6	19	78	15	119	45	23	19	11	1.82
14137--14265	19	7.3	19	75	17	125	8	17	28	45	1.77
14137--14228	33	2.8	33	93	3	150	7	18	28	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14309--14780	93	5.1	93	98	1	912	45	19	12	22	1.83
16481--16570	14	5.7	14	74	23	81	41	24	25	8	1.84
16473--16587	33	3.5	33	95	0	203	44	21	24	9	1.82
16480--16592	19	6.8	18	72	23	88	42	23	24	9	1.84
16604--16660	14	3.7	14	75	20	60	8	24	22	43	1.81
16588--16668	33	2.5	33	93	0	135	8	22	23	45	1.79
16645--16720	21	3.7	21	85	3	109	11	25	18	44	1.83
16644--16721	41	1.9	41	94	0	138	12	25	17	43	1.85
16799--16869	33	2.2	33	89	0	106	47	16	23	11	1.79
17050--17104	22	2.5	22	81	0	74	20	16	40	23	1.91
17227--17308	40	2.1	40	81	6	96	23	15	23	37	1.93
17250--17442	20	9.6	20	83	3	219	19	20	25	35	1.96
17429--17511	21	4.0	21	73	6	78	25	16	24	33	1.96
17409--17507	42	2.4	43	77	11	100	21	18	23	37	1.94
30414--30595	91	2.0	90	89	3	276	49	11	12	26	1.75
30546--30594	20	2.5	19	75	18	64	57	10	16	16	1.65
30502--30854	112	3.2	112	92	0	555	45	13	15	25	1.83
30725--31159	182	2.4	182	92	0	726	43	12	15	29	1.83
30984--31498	162	3.1	162	88	6	681	42	11	16	30	1.82
30802--31498	344	2.0	344	92	1	1166	42	11	16	29	1.83
31146--31524	182	2.1	182	92	2	636	42	11	16	29	1.84
31698--31780	41	2.0	41	100	0	166	38	12	9	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31952--31999	23	2.1	23	88	0	69	37	16	8	37	1.79
40374--40400	5	5.4	5	100	0	54	81	0	0	18	0.69
48598--48661	18	3.5	18	68	18	51	29	3	0	67	1.06
48580--48658	36	2.1	38	88	4	126	32	2	0	64	1.07
49370--49405	17	2.1	17	100	0	72	30	5	25	38	1.78

Tables:   1

The End!