genome.fa.s350.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000350.1 Hibiscus syriacus cultivar Beakdansim tig00000644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137817

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129--172	17	2.6	17	89	7	63	38	0	6	54	1.27
664--717	27	2.0	27	85	7	74	44	3	7	44	1.49
1--1271	322	3.9	329	80	11	1319	43	5	8	43	1.56
1023--1057	17	2.1	17	94	5	63	31	5	8	54	1.54
3238--3368	34	3.9	34	85	11	189	41	15	15	27	1.87
5749--5815	2	34.5	2	94	5	120	50	0	0	49	1.00
12556--12601	21	2.2	21	92	7	76	63	0	0	36	0.95
14153--14293	29	5.1	27	72	16	94	16	16	19	47	1.83
26392--26457	33	2.0	32	97	2	123	46	9	22	21	1.79
31795--31881	33	2.8	32	79	14	87	50	1	1	47	1.16
31812--31877	31	2.1	31	83	5	80	50	0	1	48	1.10
31812--31881	30	2.3	32	82	7	83	50	0	1	48	1.09
31984--32449	200	2.3	199	86	2	632	38	12	16	32	1.86
32467--32628	87	1.9	87	92	0	270	35	12	8	42	1.74
32550--32601	23	2.3	23	82	0	68	36	13	7	42	1.73
32544--32605	23	2.5	25	74	12	65	37	11	6	45	1.66
36278--36363	29	2.9	29	84	6	93	24	41	18	15	1.89
36303--36391	29	3.1	29	85	0	115	23	39	22	14	1.91
36431--36495	32	2.0	32	100	0	130	12	30	29	27	1.93
36481--36524	23	1.9	23	90	0	70	22	22	25	29	1.99
36948--37009	28	2.1	30	94	5	110	30	0	12	56	1.37
37284--37315	17	1.9	17	93	6	57	43	0	12	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40165--40878	60	12.2	60	89	5	1061	40	0	13	45	1.45
40245--40332	22	4.3	22	63	21	64	43	0	9	47	1.35
40327--40407	24	3.3	24	65	3	72	39	0	14	45	1.45
40387--40413	10	2.7	10	100	0	54	40	0	18	40	1.51
40338--41214	179	5.1	179	88	7	1321	40	0	13	45	1.44
40338--41214	239	3.8	239	88	8	1348	40	0	13	45	1.44
40626--40652	10	2.7	10	100	0	54	40	0	18	40	1.51
40816--41151	60	6.4	48	79	19	293	41	0	12	46	1.41
40862--41214	60	6.2	59	75	12	292	41	0	11	46	1.41
40960--40992	13	2.4	14	90	5	50	45	0	15	39	1.46
41016--41042	10	2.7	10	100	0	54	40	0	18	40	1.51
41124--41230	14	7.7	14	68	24	57	40	0	13	46	1.43
41135--41161	10	2.7	10	100	0	54	40	0	18	40	1.51
41161--41230	25	3.1	22	79	16	63	38	0	11	50	1.39
42221--42265	23	2.0	23	86	0	63	55	2	2	40	1.24
44213--44259	20	2.3	21	89	7	71	65	0	2	31	1.04
44690--44795	36	2.9	36	92	0	176	38	15	23	22	1.92
44709--44772	21	3.3	21	65	24	59	39	12	23	25	1.90
44924--46184	106	12.0	106	95	1	2133	23	17	25	33	1.96
51243--51289	20	2.3	21	89	7	71	65	0	2	31	1.04
52594--52640	14	3.5	13	77	11	51	2	40	0	57	1.11
52742--52808	33	2.0	33	94	0	116	31	26	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52983--53043	29	2.1	29	84	0	77	14	16	40	27	1.88
52990--53052	29	2.1	29	85	2	81	12	12	44	30	1.80
69154--69192	2	19.5	2	100	0	78	51	0	0	48	1.00
70068--70147	32	2.6	31	84	4	99	36	1	7	55	1.36
70067--70200	31	4.3	31	78	8	128	35	2	8	52	1.48
70072--70192	62	2.0	62	81	0	143	34	3	9	52	1.51
76800--77350	55	10.1	54	83	9	312	30	24	15	29	1.96
76833--77366	110	5.0	109	84	6	648	30	25	15	29	1.96
76833--77366	271	2.0	268	88	5	801	30	25	15	29	1.96
78691--78807	8	13.9	8	72	21	71	6	20	0	71	1.14
78715--78813	25	3.8	25	74	19	80	6	20	1	72	1.11
78715--78818	19	5.3	19	72	15	70	6	20	0	72	1.13
78690--78820	8	15.2	8	67	17	50	6	19	0	72	1.12
88355--88460	47	2.2	47	78	11	115	41	18	13	26	1.87
97654--97678	12	2.1	12	100	0	50	72	0	8	20	1.10
98448--98478	13	2.4	13	94	0	53	32	12	9	45	1.75
109582--109606	10	2.5	10	100	0	50	76	0	0	24	0.80
112405--112438	2	17.0	2	100	0	68	50	0	0	50	1.00
113170--113241	34	2.1	37	82	10	89	48	5	0	45	1.25
115267--115360	19	4.8	19	84	5	116	11	21	20	46	1.82
117044--117418	94	4.1	93	93	3	591	21	12	18	47	1.81
117044--117418	187	2.0	183	91	5	603	21	12	18	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117511--117585	20	3.8	20	85	3	116	50	18	21	9	1.74
117515--117600	39	2.2	39	95	0	154	48	20	19	10	1.78
117515--117600	20	4.4	19	78	12	86	48	20	19	10	1.78
117597--117741	19	7.8	19	75	12	140	11	20	20	46	1.82
118194--118263	21	3.3	21	66	7	61	24	37	18	20	1.94
118142--118260	42	2.8	42	81	5	107	23	36	17	22	1.95
119771--119814	19	2.3	19	96	0	79	43	27	15	13	1.85
119814--119907	33	2.8	33	90	3	145	10	24	21	43	1.84
119849--119927	19	4.4	19	73	16	69	12	22	21	43	1.86
119901--119973	20	3.6	20	70	17	69	23	19	24	32	1.97
122446--122499	24	2.2	24	93	0	90	40	20	18	20	1.91
123362--123427	20	3.3	20	97	0	123	22	19	21	36	1.95
123424--123469	21	2.2	21	88	0	65	36	17	28	17	1.92
124054--124222	22	7.5	22	80	9	207	36	0	11	51	1.42
124246--124304	31	1.9	31	92	0	100	44	8	5	42	1.57
124517--124555	2	19.5	2	100	0	78	51	0	0	48	1.00
126337--126376	17	2.3	18	86	4	55	37	10	22	30	1.87
126818--126849	2	16.0	2	100	0	64	50	0	0	50	1.00
126972--127021	21	2.4	21	96	0	91	44	34	6	16	1.72
127745--127791	18	2.6	19	76	10	53	21	10	2	65	1.33
129415--129643	82	2.8	80	77	11	250	41	15	11	31	1.83
137540--137600	30	2.0	30	100	0	122	22	11	16	49	1.78

Tables:   1

The End!