Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003500.1 Hibiscus syriacus cultivar Beakdansim tig00007398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121336

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8702--8769
29
2.3
29
84
2
82
41
19
5
33
1.75
15843--15902
8
7.1
8
78
16
59
73
0
15
11
1.10
16911--17157
135
1.8
134
85
4
345
27
30
17
25
1.97
17331--17380
3
16.3
3
84
12
66
34
2
0
64
1.05
17320--17380
22
2.8
22
87
9
81
32
3
0
63
1.10
20914--20958
23
2.0
22
82
4
54
60
0
0
40
0.97
33948--34289
4
85.5
4
100
0
684
25
0
24
50
1.50
41728--41770
15
2.8
15
92
3
68
48
4
4
41
1.44
45328--45433
52
2.0
52
96
0
194
32
13
16
37
1.88
53145--53438
56
5.3
56
73
6
267
29
21
17
30
1.96
53145--53521
54
6.9
54
72
6
233
29
20
17
32
1.96
53147--53459
110
2.9
110
87
1
423
29
21
16
31
1.96
64355--64412
24
2.4
24
82
8
64
41
22
8
27
1.83
70879--70964
29
3.0
29
84
3
102
19
38
29
12
1.89
71107--71191
29
2.9
29
84
3
100
15
28
38
17
1.90
72297--72343
23
2.0
23
95
0
85
40
14
12
31
1.84
97263--97318
26
2.2
26
96
0
103
28
26
10
33
1.90
98960--99048
30
3.0
30
93
0
142
32
19
13
34
1.90
99128--99217
3
30.3
3
97
2
173
0
32
0
67
0.91
99288--99319
7
4.9
7
85
14
50
0
31
12
56
1.37
99958--100016
30
2.0
30
89
0
91
38
10
15
35
1.81
100040--100511
167
2.8
164
85
1
584
30
22
12
34
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102457--102507
19
2.6
20
90
3
77
43
23
17
15
1.88
102457--102734
20
13.6
20
76
8
148
39
19
23
17
1.92
102561--102732
63
2.8
63
87
2
233
36
18
26
19
1.94
102602--102732
40
3.2
40
84
3
181
37
18
26
17
1.93
102721--102764
20
2.2
20
91
0
70
54
15
18
11
1.70
102842--102873
6
5.5
6
96
3
57
31
53
15
0
1.43
103559--103665
5
19.5
6
97
2
144
0
17
54
28
1.44
103743--103786
20
2.2
20
91
0
70
11
18
15
54
1.70
103773--103967
20
9.6
20
72
12
85
18
21
20
40
1.92
103917--103967
19
2.6
20
90
9
79
13
19
23
43
1.87
104258--104290
16
2.1
16
88
5
50
30
18
3
48
1.63
104409--104450
21
2.0
20
86
13
59
2
28
2
66
1.16
111247--111303
22
2.6
22
86
5
80
22
3
31
42
1.71

Tables:   1

The End!