genome.fa.s3501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003501.1 Hibiscus syriacus cultivar Beakdansim tig00007399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92574

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7261--7344	37	2.3	36	91	4	134	44	26	0	29	1.55
9957--10044	31	2.8	31	91	1	149	23	20	25	30	1.98
11459--11516	28	2.2	26	90	9	91	27	18	5	48	1.70
12138--12197	30	2.0	30	100	0	120	26	30	16	26	1.97
15495--15545	18	2.8	18	87	0	57	23	27	21	27	1.99
16867--16922	20	2.7	21	91	5	96	30	19	7	42	1.78
20367--20399	18	1.9	18	88	11	52	45	0	0	54	0.99
25694--25722	2	14.5	2	100	0	58	51	0	0	48	1.00
27351--27388	20	1.9	20	88	0	58	34	23	13	28	1.92
27389--27450	20	3.0	20	79	6	70	32	24	8	35	1.85
27371--27450	42	1.9	42	84	0	106	32	25	8	33	1.86
28554--28600	20	2.4	19	89	10	76	55	8	19	17	1.67
28342--28814	181	2.6	182	89	1	682	43	13	16	26	1.86
28726--28773	20	2.4	20	82	6	53	58	8	12	20	1.60
30983--31047	21	3.1	21	93	0	103	41	10	30	16	1.83
31081--31146	33	2.0	33	90	0	105	28	0	48	22	1.51
34842--34999	79	2.0	79	100	0	316	22	20	32	24	1.97
38245--38292	23	2.1	23	88	0	69	35	12	18	33	1.89
38768--38863	23	4.2	23	94	0	156	38	21	5	34	1.76
39281--39353	23	3.2	23	90	0	110	38	20	5	35	1.76
42192--43497	183	7.1	183	95	1	2298	32	16	14	35	1.89
44701--44778	3	26.0	3	78	0	84	25	33	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44702--44795	12	7.8	12	86	0	98	23	32	6	37	1.80
44732--44795	18	3.6	18	75	8	58	20	32	7	39	1.81
46301--47034	200	3.7	200	96	0	1324	30	16	14	37	1.89
47141--47201	19	3.3	18	88	2	59	52	11	1	34	1.47
47153--47201	19	2.6	19	96	0	89	55	10	2	32	1.45
48156--48217	31	2.0	31	100	0	124	54	9	22	12	1.67
48553--48613	16	3.8	16	91	0	104	57	22	11	8	1.60
50123--50184	24	2.6	24	86	0	88	53	22	11	12	1.71
51109--51253	35	4.1	35	92	2	229	44	19	4	31	1.72
51108--51287	35	5.1	36	86	7	196	42	18	6	32	1.75
55302--55333	16	2.0	16	93	0	55	34	18	6	40	1.76
55746--55890	35	4.1	35	93	2	229	44	19	4	31	1.72
55761--55924	35	4.7	34	89	6	197	42	18	6	32	1.76
60301--60362	27	2.3	27	97	0	115	14	29	25	30	1.95
63025--63050	9	2.9	9	100	0	52	11	30	23	34	1.90
68897--68956	31	1.9	31	96	0	111	36	10	26	26	1.88
72331--72426	31	3.1	31	84	3	122	35	22	18	22	1.96
80045--80083	16	2.4	17	82	4	53	41	0	0	58	0.98
81086--81133	23	2.0	24	88	4	71	31	18	27	22	1.97
86222--86344	60	2.0	60	84	3	158	31	17	17	33	1.93
87833--87886	24	2.4	21	80	14	63	55	1	1	40	1.21
87837--87882	23	2.0	24	86	4	67	54	2	2	41	1.25

Tables:   1

The End!