Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003502.1 Hibiscus syriacus cultivar Beakdansim tig00007400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95175

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1779--1822
18
2.5
18
88
3
63
36
9
25
29
1.86
2199--2971
243
3.1
244
82
10
921
39
20
12
27
1.89
2933--2997
26
2.5
26
87
5
96
32
41
12
13
1.82
3426--3464
3
12.7
3
83
5
51
25
0
5
69
1.09
6176--6280
41
2.5
41
90
1
165
40
18
17
24
1.91
6221--6835
258
2.4
248
87
4
858
35
17
15
31
1.92
6871--6980
42
2.7
41
81
4
123
36
22
17
23
1.95
6614--7031
199
2.1
200
92
0
694
36
19
16
28
1.93
8512--8594
37
2.2
37
93
2
139
25
28
15
30
1.96
18088--18155
29
2.3
29
97
0
127
35
10
17
36
1.84
22897--22924
13
2.2
13
100
0
56
46
25
21
7
1.76
23306--23943
55
11.7
55
87
3
769
28
25
14
31
1.95
23894--24050
54
3.0
51
82
9
174
22
24
19
33
1.97
24024--25087
52
20.5
52
95
0
1867
29
25
16
28
1.97
25091--25365
55
5.0
55
92
2
473
27
29
15
28
1.96
25091--25365
108
2.5
110
94
2
491
27
29
15
28
1.96
26671--26747
9
9.8
8
77
17
65
11
10
0
77
0.98
26668--26730
30
2.1
30
87
3
90
11
11
0
77
0.99
26671--26744
39
1.9
38
84
10
98
12
10
0
77
1.01
26696--26753
25
2.3
25
85
5
82
12
10
0
77
0.99
27872--27906
3
11.3
3
93
6
61
2
34
0
62
1.10
35287--35314
13
2.2
13
100
0
56
46
25
21
7
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35396--35448
3
17.3
3
77
11
54
64
3
0
32
1.12
35623--35736
27
4.4
28
72
17
111
37
1
0
60
1.07
35717--35760
19
2.3
19
84
0
52
59
0
0
40
0.98
35758--35796
20
1.9
20
84
5
51
51
0
10
38
1.36
35847--35896
24
2.1
24
85
7
66
42
2
0
56
1.11
53540--53606
33
2.0
33
100
0
134
14
25
44
14
1.84
53654--53721
3
23.3
3
78
11
70
39
0
0
60
0.97
53677--53729
24
2.1
26
89
6
83
39
0
0
60
0.97
66402--66440
10
3.8
10
89
3
60
87
0
12
0
0.55
66398--66441
21
2.2
20
91
4
70
84
0
15
0
0.63
66399--66441
11
4.0
11
87
6
61
83
0
16
0
0.64
67599--67845
83
3.0
83
96
1
451
27
14
22
36
1.93
68661--70133
113
12.9
113
78
10
1356
37
14
17
30
1.89
68642--70120
226
6.5
226
77
12
1539
37
13
18
30
1.89
68366--69762
698
2.0
698
99
0
2740
37
13
17
31
1.89
70446--70529
3
28.0
3
87
0
123
39
0
0
60
0.97
70993--71024
15
2.1
15
94
0
55
78
0
21
0
0.76
76681--76714
17
2.0
17
88
0
50
41
11
5
41
1.66
79182--79209
14
2.0
14
100
0
56
28
7
7
57
1.52
80936--80993
20
2.9
19
82
12
64
27
18
18
34
1.95
86761--86806
20
2.3
20
88
7
67
26
30
10
32
1.90
87896--87928
14
2.4
14
100
0
66
33
12
27
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90731--90797
30
2.2
30
92
5
109
44
8
14
31
1.76
91868--91912
20
2.3
20
88
3
65
35
0
24
40
1.56
95021--95175
54
2.8
55
80
12
167
45
5
7
41
1.53
94960--95175
56
3.9
54
75
11
163
44
6
7
40
1.59

Tables:   1

The End!