genome.fa.s3503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003503.1 Hibiscus syriacus cultivar Beakdansim tig00007401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68098

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1704--1756	21	2.5	21	96	0	97	37	22	32	7	1.82
2213--2373	43	3.7	43	84	2	198	32	24	14	27	1.95
2177--2371	87	2.3	86	83	7	218	33	23	14	28	1.94
2213--2371	86	1.8	86	86	9	234	32	25	14	27	1.94
3045--3084	21	2.0	20	85	5	53	37	10	25	27	1.88
5402--5478	23	3.3	23	73	8	66	27	24	22	25	2.00
8636--8683	7	6.9	7	100	0	96	14	0	41	43	1.45
8613--8683	21	3.4	21	86	0	70	21	0	33	45	1.52
9183--9240	11	5.5	11	70	15	50	39	1	1	56	1.19
9184--9243	31	1.9	32	86	10	88	40	1	1	56	1.19
9936--10300	200	1.8	201	80	7	447	34	7	20	37	1.81
13113--13142	14	2.1	14	93	0	51	33	36	3	26	1.73
16340--16387	2	24.5	2	95	4	89	50	0	0	50	1.00
25080--25142	19	3.4	19	76	17	69	42	4	1	50	1.32
26567--26691	44	2.8	44	83	0	151	28	20	17	32	1.96
26740--26882	36	4.0	37	87	5	195	30	13	9	47	1.73
30357--30424	33	2.1	33	94	0	118	22	27	17	32	1.96
30582--30613	12	2.7	12	95	0	55	25	43	18	12	1.85
30632--30718	38	2.3	38	82	7	122	50	1	0	48	1.08
35973--36048	37	2.1	37	89	0	116	34	3	23	38	1.74
36010--36136	53	2.4	55	88	4	188	33	6	21	39	1.78
36982--37045	26	2.5	27	82	10	89	21	17	6	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39505--39558	26	2.1	25	93	3	90	48	0	9	42	1.35
39700--39781	39	2.1	40	95	2	148	28	6	20	45	1.75
40415--40535	61	2.0	61	90	3	190	28	22	19	29	1.98
41040--41098	29	2.0	31	83	6	77	35	11	15	37	1.84
41057--41141	31	2.8	31	84	10	95	35	11	14	38	1.82
41236--41327	29	3.1	28	78	6	76	42	9	8	39	1.69
56898--57002	3	35.0	3	100	0	210	66	0	0	33	0.92
57199--57271	18	4.2	17	82	5	92	39	9	10	39	1.73
57366--57447	41	2.0	41	90	0	128	25	15	14	43	1.85
65544--65584	18	2.3	18	87	8	57	48	14	29	7	1.71

Tables:   1

The End!