genome.fa.s3505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003505.1 Hibiscus syriacus cultivar Beakdansim tig00007411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60366

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9608--9658	18	2.8	20	77	17	56	39	9	27	23	1.86
9804--9878	38	2.0	37	82	5	89	49	4	1	45	1.29
10086--10140	25	2.2	26	96	3	103	41	14	20	23	1.89
11137--11835	315	2.2	315	85	2	922	28	16	5	49	1.68
11137--11835	156	4.4	156	81	4	814	28	16	5	49	1.68
15904--16432	41	13.0	41	76	4	424	28	19	17	34	1.95
16123--16422	121	2.4	121	80	4	325	27	19	17	35	1.94
16041--16432	203	1.9	203	79	5	434	28	19	17	35	1.94
19212--19753	43	12.6	42	84	3	672	24	24	18	32	1.97
20115--20155	12	3.4	12	80	12	57	51	7	14	26	1.69
20113--20161	24	2.0	24	96	0	89	44	10	16	28	1.80
20799--20847	25	2.0	25	95	0	89	46	16	10	26	1.78
21566--21597	17	1.9	17	93	6	57	25	0	25	50	1.50
23992--24026	15	2.4	14	90	4	52	65	5	11	17	1.43
24127--24158	16	2.0	16	100	0	64	31	0	31	37	1.58
24877--24928	26	1.9	27	88	7	79	44	0	0	55	0.99
28646--28733	36	2.4	36	100	0	176	34	13	23	28	1.93
28733--28769	2	18.5	2	100	0	74	51	0	0	48	1.00
28769--28802	2	17.0	2	93	0	59	47	0	52	0	1.00
35752--35791	19	2.1	19	100	0	80	42	5	30	22	1.75
40276--40317	20	2.1	20	95	0	75	19	7	38	35	1.79
40509--40816	153	2.0	155	96	3	570	26	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40796--40843	23	2.1	23	100	0	96	35	25	22	16	1.95
47847--47885	21	1.9	20	84	5	51	51	2	2	43	1.29
50886--50993	39	2.8	39	82	2	128	39	12	2	45	1.56
51067--51114	24	2.0	24	84	8	62	39	2	4	54	1.32
59965--59989	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!