Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003507.1 Hibiscus syriacus cultivar Beakdansim tig00007414_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120670

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8591--8623
2
16.5
2
100
0
66
0
48
0
51
1.00
8623--8659
2
18.5
2
100
0
74
48
0
0
51
1.00
16930--17004
38
1.9
39
86
5
107
46
9
8
36
1.65
21885--22122
115
2.1
116
83
6
295
27
9
4
58
1.50
22727--22768
20
2.1
20
86
0
57
28
11
0
59
1.33
23491--23758
20
13.2
20
78
10
260
40
24
19
16
1.90
23854--23973
6
20.5
6
99
0
219
31
51
16
0
1.45
24462--24571
6
18.5
6
99
0
213
0
16
50
32
1.45
24670--25023
20
17.2
19
74
18
204
16
19
26
37
1.93
24667--25047
62
6.1
60
84
9
344
17
19
26
37
1.93
24667--25047
104
3.7
104
90
5
530
17
19
26
37
1.93
24667--25102
42
10.6
41
81
9
421
16
19
26
37
1.93
24673--25105
104
4.2
101
87
7
474
16
19
26
37
1.93
37211--37251
22
1.9
21
85
5
55
36
4
29
29
1.78
41723--41863
36
3.9
36
95
0
255
20
39
7
31
1.81
43604--43728
65
1.9
65
91
0
205
24
22
26
26
2.00
49167--49218
17
2.8
19
77
13
56
53
0
1
44
1.11
49354--49395
22
1.9
22
85
9
59
57
2
2
38
1.25
49827--49909
32
2.6
32
75
3
78
36
25
13
25
1.92
53727--53810
35
2.4
34
81
11
91
39
0
3
57
1.16
53735--54383
327
2.0
325
97
0
1235
35
12
10
41
1.78
60755--61255
55
9.1
55
80
8
249
32
23
15
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60788--61256
110
4.3
109
84
6
585
31
24
15
28
1.95
60788--61257
165
2.9
164
81
8
546
31
24
15
28
1.95
60821--61271
55
8.3
52
81
6
417
32
24
14
28
1.95
62626--62725
18
5.8
18
70
18
63
7
20
1
72
1.14
62632--62753
36
3.4
34
74
20
90
9
16
0
72
1.15
62731--62784
22
2.4
23
78
9
58
11
11
0
77
0.99
72413--72501
45
1.9
47
93
4
155
37
22
11
29
1.89
79203--79323
60
2.0
60
93
0
206
42
19
19
19
1.90
84450--84587
60
2.3
59
78
13
156
38
14
12
34
1.84
90378--90410
17
2.0
17
88
5
50
21
6
15
57
1.59
94309--94342
16
2.1
16
94
0
59
29
14
5
50
1.67
95206--95236
15
2.1
15
93
0
53
19
16
16
48
1.81
103146--103258
55
2.1
55
96
0
208
29
26
4
39
1.75
112166--112221
24
2.3
24
87
6
78
26
16
16
41
1.88
112166--112221
12
4.7
12
76
8
60
26
16
16
41
1.88
112459--112583
24
5.2
24
72
5
101
42
16
16
24
1.88
112459--112574
47
2.5
47
80
9
137
40
15
17
26
1.89
115889--115913
12
2.1
12
100
0
50
28
16
8
48
1.74
116841--118897
214
9.7
215
84
6
2575
33
22
20
22
1.97

Tables:   1

The End!