Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000351.1 Hibiscus syriacus cultivar Beakdansim tig00000645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102759

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27113--27149
2
18.0
2
94
5
65
48
2
0
48
1.15
28586--28630
23
2.0
23
86
0
63
26
28
24
20
1.99
28609--28912
149
2.0
149
99
0
599
34
20
17
27
1.95
29445--29510
2
33.0
2
100
0
132
50
0
0
50
1.00
29836--29870
18
1.9
18
88
11
54
22
17
5
54
1.64
35213--35239
2
13.5
2
100
0
54
51
0
0
48
1.00
36595--36625
16
1.9
16
93
0
53
51
12
0
35
1.40
36631--36684
2
27.0
2
88
0
81
46
1
3
48
1.30
37314--37358
14
2.9
16
83
12
67
42
8
6
42
1.62
48931--48955
3
8.3
3
100
0
50
0
0
32
68
0.90
49923--49949
14
1.9
14
100
0
54
29
14
25
29
1.95
59447--59535
42
2.1
43
85
2
117
17
2
21
58
1.50
62503--62566
30
2.1
30
88
0
92
34
26
18
20
1.96
63246--63516
64
4.2
64
79
10
236
26
17
19
35
1.94
64155--64210
23
2.4
23
100
0
112
41
12
5
41
1.66
65288--65325
2
20.5
2
84
15
55
50
0
0
50
1.00
65319--65369
25
2.0
25
85
7
68
29
5
1
62
1.29
65894--65936
21
2.0
22
86
13
63
74
4
13
6
1.19
74899--74941
15
2.8
16
82
7
61
20
0
2
76
0.89
74902--74941
5
7.8
5
86
5
53
20
0
2
77
0.88
80527--80602
31
2.4
32
81
14
88
50
3
6
39
1.47
81257--81470
40
5.4
40
98
1
405
33
14
15
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82185--82269
42
2.0
42
90
0
134
37
11
12
37
1.81
83888--83944
28
2.0
28
93
0
96
42
10
21
26
1.85
84534--84567
18
1.9
17
94
5
59
82
0
14
2
0.79
85183--85213
2
16.0
2
93
6
55
48
0
0
51
1.00
89816--89976
20
7.9
19
75
10
124
14
26
36
22
1.93
89834--89976
20
7.2
19
80
9
151
14
25
36
23
1.93
89816--89976
40
4.0
39
88
4
205
14
26
36
22
1.93
90297--90362
24
2.8
24
100
0
132
22
40
0
36
1.54
92733--92799
20
3.3
20
80
12
82
10
17
40
31
1.84
92731--92812
21
4.0
21
87
1
112
12
20
36
30
1.89
94611--94738
31
4.1
31
74
11
100
32
21
16
29
1.95
94643--94732
32
2.9
30
74
14
83
32
20
14
33
1.92
99616--99757
64
2.2
64
85
10
186
26
20
19
34
1.96
100449--100536
31
2.8
32
89
1
124
26
18
20
35
1.95
100449--100549
32
3.3
31
87
4
132
27
18
18
34
1.95
100536--100580
21
2.1
21
87
0
63
24
20
17
37
1.93

Tables:   1

The End!