genome.fa.s3511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003511.1 Hibiscus syriacus cultivar Beakdansim tig00007422_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68270

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
861--911	24	2.1	24	92	0	84	13	41	13	31	1.84
3044--3076	13	2.4	14	90	5	50	78	3	15	3	0.99
4137--4175	19	2.2	17	86	9	51	15	10	5	69	1.34
8914--9142	95	2.4	95	85	3	280	33	17	22	26	1.96
9087--9142	22	2.5	22	94	0	94	35	17	19	26	1.94
9642--9722	34	2.4	34	91	0	135	34	9	24	30	1.88
10130--10259	65	2.0	65	86	0	179	32	15	23	29	1.95
12102--12171	35	2.0	35	94	0	122	22	20	28	28	1.98
19478--19520	20	2.2	20	91	0	68	34	20	11	32	1.89
20511--20644	65	2.1	65	91	0	214	32	18	21	27	1.97
20995--21051	27	2.1	27	96	0	105	42	24	8	24	1.83
22945--22993	18	2.7	18	87	0	62	34	30	18	16	1.93
28519--28543	10	2.5	10	100	0	50	28	0	40	32	1.57
30326--30532	95	2.2	96	85	4	267	33	14	25	26	1.95
30481--30528	22	2.3	22	89	7	73	31	14	27	27	1.95
30585--30646	2	31.0	2	100	0	124	50	0	0	50	1.00
30993--31147	79	2.0	79	90	0	247	35	10	24	29	1.89
40092--40162	35	2.0	35	94	0	124	45	15	19	19	1.86
41625--41673	22	2.3	22	92	3	82	67	10	0	22	1.20
45317--45347	15	2.1	15	93	0	53	19	32	3	45	1.66
46126--46179	25	2.2	25	86	0	72	38	16	14	29	1.89
46338--46546	32	6.7	32	74	12	139	36	19	17	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46338--46562	64	3.6	62	77	4	197	36	20	16	26	1.94
47015--47124	44	2.5	44	83	4	123	26	30	20	21	1.98
47737--47784	2	24.5	2	95	4	89	50	0	0	50	1.00
47810--48190	38	10.5	36	80	13	376	44	2	6	46	1.41
47934--47994	27	2.3	26	88	5	88	42	3	6	47	1.45
47821--48111	139	2.1	138	86	6	412	45	3	5	46	1.41
47944--48001	27	2.1	27	87	6	80	43	3	5	48	1.42
47944--48013	29	2.5	27	81	9	70	45	2	5	45	1.41
48226--48269	18	2.4	18	81	7	54	22	0	4	72	1.02
51827--51887	22	2.8	22	84	0	68	37	6	4	50	1.50
53533--53587	23	2.4	23	100	0	110	41	21	16	20	1.90
53533--53603	23	3.1	23	91	0	97	40	21	15	22	1.90
57068--57432	55	6.7	55	85	5	404	30	25	16	27	1.97
57074--57467	110	3.7	109	84	6	461	29	26	15	27	1.96
57079--57432	165	2.2	161	85	5	471	31	25	16	27	1.96
57469--57921	54	8.5	54	92	0	734	18	25	18	36	1.94
58295--58418	37	3.4	37	85	4	144	25	17	21	34	1.96
58326--58418	36	2.5	37	91	1	143	21	18	22	37	1.94
63001--63151	72	2.1	72	92	0	248	25	25	12	37	1.91
67364--67402	19	2.1	19	90	9	62	33	10	33	23	1.88
67569--67602	16	2.2	15	89	5	50	50	0	0	50	1.00

Tables:   1

The End!