Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003512.1 Hibiscus syriacus cultivar Beakdansim tig00007423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62952

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1506--1542
17
2.1
18
90
5
58
54
5
32
8
1.53
3256--3289
17
1.9
18
88
5
52
44
5
20
29
1.75
3546--3606
27
2.3
27
91
0
95
31
19
16
32
1.94
6455--6512
29
2.1
28
81
15
68
44
10
17
27
1.81
13924--13969
20
2.3
20
85
7
58
28
2
2
67
1.14
14974--15004
12
2.7
11
90
9
53
64
0
0
35
0.94
15382--15509
65
2.0
65
85
3
177
29
25
14
29
1.95
15672--15727
15
3.6
15
74
9
58
16
23
35
25
1.94
16729--16925
99
2.0
100
87
5
283
45
13
9
31
1.75
17598--17925
107
3.1
106
83
2
379
36
12
11
39
1.80
18955--19047
31
3.0
31
78
6
107
44
5
6
44
1.52
20230--20272
20
2.2
20
91
0
68
32
20
20
25
1.97
20250--20496
60
4.1
61
77
10
240
40
21
17
21
1.92
20280--20496
20
10.8
20
79
8
185
40
22
17
20
1.91
20654--20710
21
2.7
21
91
5
89
21
45
12
21
1.83
21096--21140
20
2.2
20
84
0
54
17
17
15
48
1.81
24983--25151
20
8.4
20
99
0
329
40
20
18
20
1.91
25179--25228
20
2.5
20
93
0
82
34
24
16
26
1.95
26052--26105
24
2.2
24
93
0
90
20
18
20
40
1.91
28536--28624
20
4.4
20
79
8
101
38
23
19
19
1.93
28536--28624
40
2.2
40
90
4
135
38
23
19
19
1.93
28616--28691
33
2.3
34
95
2
136
46
18
23
11
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28704--28772
33
2.1
34
86
8
97
13
23
20
43
1.86
30883--30951
20
3.5
20
91
0
102
36
23
20
20
1.95
30996--31082
20
4.3
20
92
2
140
21
19
20
37
1.94
32421--32576
31
5.0
31
87
3
217
36
21
20
21
1.95
32421--32574
62
2.5
62
91
4
249
36
21
20
21
1.95
32754--32800
23
2.0
24
91
4
78
34
21
0
44
1.52
33398--33442
21
2.1
21
87
0
63
15
24
28
31
1.96
36261--36416
31
5.0
31
85
3
208
35
21
20
21
1.96
36261--36414
62
2.5
62
90
4
240
35
21
20
22
1.96
37239--37283
21
2.1
21
87
0
63
15
24
28
31
1.96
39315--39404
20
4.6
20
85
1
101
45
23
16
14
1.84
39732--39807
22
3.5
22
88
0
107
21
15
38
25
1.92
40021--40066
21
2.2
21
92
0
74
39
17
26
17
1.91
40371--40501
60
2.2
60
84
9
162
35
22
5
37
1.77
40608--40729
60
2.0
61
82
7
151
37
4
24
32
1.77
46388--46461
33
2.2
33
88
4
105
21
31
35
12
1.90
46481--46568
30
3.0
30
88
5
117
21
27
30
20
1.98
59899--59929
15
2.1
15
93
0
53
32
9
6
51
1.60

Tables:   1

The End!