genome.fa.s3514.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003514.1 Hibiscus syriacus cultivar Beakdansim tig00007432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93147

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351--375	12	2.1	12	100	0	50	72	0	28	0	0.86
2652--2938	19	16.4	19	78	17	329	47	18	20	13	1.82
2652--2919	33	7.8	33	85	10	248	47	18	20	13	1.82
2652--2960	52	5.9	55	84	12	317	46	18	20	14	1.83
2680--2960	33	8.1	36	83	13	239	46	17	21	14	1.83
2967--3068	19	5.6	19	85	12	151	14	23	17	44	1.86
3175--3211	14	2.6	14	91	0	65	45	21	0	32	1.52
5133--5179	20	2.4	20	89	3	69	44	29	14	10	1.79
5170--5226	14	3.7	14	77	20	60	45	22	21	10	1.82
5151--5243	33	2.8	33	91	0	150	47	23	19	9	1.79
5184--5248	19	3.7	19	78	19	86	46	20	21	12	1.83
5244--5372	19	7.3	19	75	17	125	8	17	28	45	1.77
5244--5335	33	2.8	33	93	3	150	7	18	28	45	1.76
5404--5870	93	5.0	93	99	0	918	46	19	12	21	1.83
5404--5870	185	2.5	186	99	0	918	46	19	12	21	1.83
7572--7661	14	5.7	14	74	23	81	42	23	25	8	1.83
7564--7678	33	3.5	33	95	0	212	45	20	24	9	1.81
7571--7683	19	6.8	18	72	23	88	43	22	24	9	1.83
7695--7749	14	3.6	14	73	21	56	9	25	23	41	1.83
7679--7749	33	2.2	33	94	0	124	8	22	25	43	1.81
7690--7771	33	2.5	33	89	2	119	9	25	21	42	1.84
7702--7790	20	4.8	20	72	19	75	12	24	19	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7870--7940	33	2.2	33	92	0	115	47	18	22	11	1.80
8321--8513	20	9.6	20	82	5	219	19	19	25	35	1.95
8321--8513	60	3.2	60	83	0	251	19	19	25	35	1.95
8569--8620	20	2.6	20	96	0	95	21	13	26	38	1.90
9684--9715	2	16.5	2	93	6	57	50	0	0	50	1.00
11143--11218	35	2.2	35	92	0	125	39	23	1	35	1.63
11615--11862	130	1.9	130	92	0	415	35	15	13	35	1.86
11629--11893	130	2.0	129	81	4	309	38	13	13	33	1.84
12189--12251	28	2.3	27	78	8	63	46	1	3	49	1.27
12333--12365	17	1.9	17	88	11	50	63	6	3	27	1.32
18772--18878	52	2.1	52	89	0	160	28	12	24	34	1.91
19187--19246	31	1.9	32	89	3	95	50	5	1	43	1.34
26602--26713	35	3.2	35	85	0	143	40	22	0	36	1.60
26709--26783	35	2.1	35	82	4	89	34	0	21	44	1.53
34483--34507	2	12.5	2	100	0	50	48	0	0	52	1.00
40072--40104	16	2.1	16	100	0	66	30	27	6	36	1.81
42323--42350	14	2.0	14	100	0	56	21	7	21	50	1.72
48118--48146	12	2.4	12	100	0	58	41	27	13	17	1.87
61435--61459	11	2.3	11	100	0	50	24	40	12	24	1.88
64558--64633	35	2.2	35	92	0	125	39	23	1	35	1.63
65018--65275	128	2.0	126	90	1	408	36	14	12	36	1.85
65603--65665	28	2.3	27	78	8	63	46	1	3	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65739--65775	15	2.4	16	86	13	51	59	5	2	32	1.34
68492--68553	26	2.3	26	83	5	70	41	6	0	51	1.27
72132--72238	52	2.1	52	89	0	160	28	12	24	34	1.91
72547--72606	31	1.9	32	89	3	95	50	5	1	43	1.34
79958--80069	35	3.2	35	85	0	143	40	22	0	36	1.60
80065--80139	35	2.1	35	82	4	89	34	0	21	44	1.53
87832--87862	2	15.5	2	100	0	62	48	0	0	51	1.00
88126--88201	39	2.0	38	89	2	116	36	13	17	32	1.88

Tables:   1

The End!