genome.fa.s3515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003515.1 Hibiscus syriacus cultivar Beakdansim tig00007433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116718

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166--298	31	4.3	32	88	6	179	30	13	24	30	1.94
24493--24542	2	25.0	2	100	0	100	50	0	0	50	1.00
24629--24761	60	2.2	60	81	7	146	32	18	14	34	1.91
25466--25673	21	10.0	21	68	15	110	23	18	24	34	1.96
25534--25670	42	3.3	42	95	0	238	21	17	24	36	1.95
26405--26445	5	7.6	5	97	2	55	0	19	53	26	1.45
26408--26446	6	7.0	6	97	2	57	0	17	53	28	1.44
26535--26696	42	3.9	42	93	1	265	35	25	19	19	1.95
26526--26752	42	5.5	41	86	7	203	34	22	20	21	1.96
26538--26725	84	2.2	83	86	5	252	35	23	20	20	1.96
26532--26736	21	9.8	21	73	15	174	34	23	20	20	1.96
26602--26744	63	2.3	61	89	4	205	33	23	20	21	1.97
27016--27077	19	3.1	21	73	13	60	54	9	6	29	1.57
30461--30812	43	8.2	42	82	5	418	31	18	25	24	1.98
30461--30812	85	4.1	84	82	4	418	31	18	25	24	1.98
34837--35072	41	5.7	41	79	8	246	33	19	19	26	1.96
34837--35194	40	8.7	40	81	8	310	32	20	19	27	1.96
40433--40498	28	2.4	28	100	0	132	48	15	6	30	1.69
40433--40498	14	4.7	14	71	14	64	48	15	6	30	1.69
41068--41105	17	2.4	17	86	8	53	15	23	47	13	1.81
48326--48355	2	15.0	2	100	0	60	50	0	0	50	1.00
51795--51877	42	2.0	42	92	0	139	26	13	13	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53968--54070	33	3.2	33	88	2	156	45	15	6	32	1.72
54065--54106	21	2.0	21	95	0	75	47	7	14	30	1.71
74841--74886	18	2.6	18	100	0	92	41	26	13	19	1.88
75989--76112	33	3.8	33	94	0	212	26	26	13	33	1.94
81683--81734	26	2.0	27	92	3	88	40	9	1	48	1.47
82405--82462	10	5.6	10	75	15	55	58	17	10	13	1.62
82409--82455	16	2.9	16	87	0	76	57	19	12	10	1.64
82401--82464	32	2.1	30	88	5	92	59	15	9	15	1.60
82813--82842	10	3.0	10	95	0	51	56	23	10	10	1.62
84679--84793	60	1.9	59	87	5	169	37	16	16	29	1.91
84670--84810	60	2.3	60	82	8	162	36	16	17	29	1.92
89367--89400	2	17.0	2	100	0	68	50	0	0	50	1.00
95749--95826	41	1.9	41	89	5	122	41	10	11	37	1.75
102481--102521	22	1.9	22	85	5	57	53	7	4	34	1.50
105379--105433	27	2.0	27	92	0	92	45	9	12	32	1.74
108806--108833	2	14.0	2	100	0	56	50	0	0	50	1.00
109859--109891	17	1.9	17	88	11	50	54	0	9	36	1.32
116502--116555	21	2.7	21	69	8	51	66	5	1	25	1.23

Tables:   1

The End!