Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003516.1 Hibiscus syriacus cultivar Beakdansim tig00007434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72770
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Found at i:7222 original size:29 final size:28
Alignment explanation
Indices: 7179--7363 Score: 164
Period size: 29 Copynumber: 6.5 Consensus size: 28
7169 CGTTGACCGA
7179 GTGATATTTTAGTAATTATTTTTAAAATG
1 GTGATATTTT-GTAATTATTTTTAAAATG
* *
7208 GTGATATTTTGGTAATGATTTTCAAAATG
1 GTGATATTTT-GTAATTATTTTTAAAATG
* **
7237 GTGCTATTTT-T--TTAATTTTTAAAAAA
1 GTGATATTTTGTAATT-ATTTTTAAAATG
7263 GTGATAATTTTGTAATT-TTTTTAAAAT-
1 GTGAT-ATTTTGTAATTATTTTTAAAATG
** *
7290 GTGATATTTTCGTAATTAGCTTTAAAAAG
1 GTGATATTTT-GTAATTATTTTTAAAATG
* *
7319 GTGATATTTTAGTAAATATTTCTTAAAAGG
1 GTGATATTTT-GTAATTATTT-TTAAAATG
*
7349 GTGATAATTGTGTAA
1 GTGAT-ATTTTGTAA
7364 AATGGTTGAT
Statistics
Matches: 127, Mismatches: 19, Indels: 19
0.77 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 18 0.14
27 17 0.13
28 17 0.13
29 52 0.41
30 18 0.14
31 4 0.03
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.48
Consensus pattern (28 bp):
GTGATATTTTGTAATTATTTTTAAAATG
Found at i:7278 original size:55 final size:53
Alignment explanation
Indices: 7196--7339 Score: 137
Period size: 55 Copynumber: 2.6 Consensus size: 53
7186 TTTAGTAATT
** *
7196 ATTTTTAAAATGGTGATATTTTGGTAATGATTTTCAAAATGGTGCTATTTTTTTA
1 ATTTTTAAAAAAGTGATATTTTGGTAAT-ATTTTCAAAAT-GTGATATTTTTTTA
* * **
7251 ATTTTTAAAAAAGTGATAATTTT-GTAATTTTTTTAAAATGTGATATTTTCGTA
1 ATTTTTAAAAAAGTGAT-ATTTTGGTAATATTTTCAAAATGTGATATTTTTTTA
* *
7304 ATTAGCTTTAAAAAGGTGATATTTTAGTAAATATTT
1 ATT---TTTAAAAAAGTGATATTTTGGT-AATATTT
7340 CTTAAAAGGG
Statistics
Matches: 74, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
53 14 0.19
54 9 0.12
55 25 0.34
56 20 0.27
57 6 0.08
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (53 bp):
ATTTTTAAAAAAGTGATATTTTGGTAATATTTTCAAAATGTGATATTTTTTTA
Found at i:9447 original size:28 final size:25
Alignment explanation
Indices: 9411--9462 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
9401 ATAGGGAATA
9411 AAATAAAATAAATAAAGATAAAAAATG
1 AAATAAAATAAA-AAA-ATAAAAAATG
*
9438 AAATAGAAATAAAAAAATAATAAAT
1 AAATA-AAATAAAAAAATAAAAAAT
9463 AATAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 8 0.35
28 7 0.30
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (25 bp):
AAATAAAATAAAAAAATAAAAAATG
Found at i:9449 original size:18 final size:17
Alignment explanation
Indices: 9415--9510 Score: 54
Period size: 18 Copynumber: 5.4 Consensus size: 17
9405 GGAATAAAAT
9415 AAAATAAATAAAGATAA
1 AAAATAAATAAAGATAA
9432 AAAATGAAATAGAA-ATAA
1 AAAAT-AAATA-AAGATAA
*
9450 AAAA-ATAATAAATAATAA
1 AAAATA-AATAAA-GATAA
* * *
9468 ATAAT-AATATAATATAT
1 AAAATAAATA-AAGATAA
* *
9485 AATATATAATAAATATAA
1 AAAATA-AATAAAGATAA
9503 GAAAATAA
1 -AAAATAA
9511 TAATAATATA
Statistics
Matches: 62, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
16 3 0.05
17 19 0.31
18 29 0.47
19 11 0.18
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (17 bp):
AAAATAAATAAAGATAA
Found at i:9459 original size:3 final size:3
Alignment explanation
Indices: 9453--9518 Score: 57
Period size: 3 Copynumber: 21.3 Consensus size: 3
9443 GAAATAAAAA
9453 AAT AAT AAAT AAT AAAT AAT AAT -AT AAT ATAT AAT ATAT AAT AA- ATAT
1 AAT AAT -AAT AAT -AAT AAT AAT AAT AAT A-AT AAT A-AT AAT AAT A-AT
*
9501 AAG AA- AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
9519 TATACCATAA
Statistics
Matches: 54, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
2 5 0.09
3 36 0.67
4 13 0.24
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9464 original size:7 final size:7
Alignment explanation
Indices: 9452--9540 Score: 72
Period size: 7 Copynumber: 11.9 Consensus size: 7
9442 AGAAATAAAA
9452 AAATAAT
1 AAATAAT
9459 AAATAAT
1 AAATAAT
9466 AAATAAT
1 AAATAAT
9473 AATATAAT
1 AA-ATAAT
*
9481 ATATAAT
1 AAATAAT
*
9488 ATATAAT
1 AAATAAT
9495 AAAT-AT
1 AAATAAT
*
9501 AAGAAAAT
1 AA-ATAAT
9509 AATAATAAT
1 -A-AATAAT
*
9518 ATATACCAT
1 AAATA--AT
9527 AAATAAAT
1 AAAT-AAT
9535 AAATAA
1 AAATAA
9541 GAACAAGAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
6 4 0.06
7 37 0.54
8 15 0.22
9 10 0.15
10 2 0.03
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.30
Consensus pattern (7 bp):
AAATAAT
Found at i:9552 original size:24 final size:24
Alignment explanation
Indices: 9525--9579 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
9515 AATATATACC
*
9525 ATAAATAA-ATAAATAAGAACAAGA
1 ATAAATAACAAAAATAAGAACAA-A
* * *
9549 ATAAAAAACAAAAATAGGAATAAA
1 ATAAATAACAAAAATAAGAACAAA
9573 ATAAATA
1 ATAAATA
9580 TAAAGGCAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.73, C:0.04, G:0.07, T:0.16
Consensus pattern (24 bp):
ATAAATAACAAAAATAAGAACAAA
Found at i:9552 original size:39 final size:37
Alignment explanation
Indices: 9454--9552 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 37
9444 AAATAAAAAA
* * *
9454 ATAATAAATAATAA-ATAATAAT-ATAATATATAATAT
1 ATAATAAAT-ATAAGAAAAGAATAATAATATATAACAT
* *
9490 ATAATAAATATAAGAAAATAATAATAATATATACCAT
1 ATAATAAATATAAGAAAAGAATAATAATATATAACAT
9527 A-AATAAATAAATAAGAACAAGAATAA
1 ATAATAAAT--ATAAGAA-AAGAATAA
9553 AAAACAAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
35 4 0.07
36 23 0.43
37 13 0.24
38 7 0.13
39 7 0.13
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (37 bp):
ATAATAAATATAAGAAAAGAATAATAATATATAACAT
Found at i:9552 original size:42 final size:42
Alignment explanation
Indices: 9467--9552 Score: 97
Period size: 42 Copynumber: 2.0 Consensus size: 42
9457 ATAAATAATA
* * *
9467 AATAATAATATAATATATAATATATAATAAATATAAGAAAAT
1 AATAATAATATAATACATAATATATAATAAATAGAACAAAAT
9509 AATAATAATAT-ATACCATAA-ATA-AATAAATAAGAACAAGAAT
1 AATAATAATATAATA-CATAATATATAATAAAT-AGAACAA-AAT
9551 AA
1 AA
9553 AAAACAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
40 7 0.18
41 11 0.29
42 20 0.53
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (42 bp):
AATAATAATATAATACATAATATATAATAAATAGAACAAAAT
Found at i:9633 original size:13 final size:13
Alignment explanation
Indices: 9611--9644 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
9601 TAAAGAATAT
*
9611 AAAAATAGAGAGA
1 AAAAAAAGAGAGA
9624 AAAAAAAGAGAGA
1 AAAAAAAGAGAGA
9637 AAAAAAAG
1 AAAAAAAG
9645 TAAAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (13 bp):
AAAAAAAGAGAGA
Found at i:10182 original size:11 final size:11
Alignment explanation
Indices: 10159--10190 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
10149 GTAACAAAAT
10159 AAATAAT-ATA
1 AAATAATAATA
10169 AAATAATAATA
1 AAATAATAATA
10180 AAATAATAATA
1 AAATAATAATA
10191 TAGGATCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AAATAATAATA
Found at i:11995 original size:23 final size:23
Alignment explanation
Indices: 11962--12006 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
11952 TGCCTTGAGC
*
11962 TAAGCTGCAAATAATAAGTCTTT
1 TAAGCTACAAATAATAAGTCTTT
11985 TAAGCTACAAATAATAAGTCTT
1 TAAGCTACAAATAATAAGTCTT
12007 CGAAGCTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (23 bp):
TAAGCTACAAATAATAAGTCTTT
Found at i:12012 original size:23 final size:23
Alignment explanation
Indices: 11963--12013 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
11953 GCCTTGAGCT
* **
11963 AAGCTGCAAATAATAAGTCTTTT
1 AAGCTACAAATAATAAGTCTTCG
11986 AAGCTACAAATAATAAGTCTTCG
1 AAGCTACAAATAATAAGTCTTCG
12009 AAGCT
1 AAGCT
12014 GAGCATAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (23 bp):
AAGCTACAAATAATAAGTCTTCG
Found at i:12284 original size:169 final size:167
Alignment explanation
Indices: 12006--12826 Score: 711
Period size: 169 Copynumber: 4.9 Consensus size: 167
11996 TAATAAGTCT
* * * * * * *
12006 TCGAAGCTGAGCATAGCCGAACTCGAAGGTTTTTGGTTGGAAAATAACCCTTCTTA-CCTTGAGC
1 TCGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC-TAGACTTGAGT
** * * * * * ** *
12070 TATATTGCAAATGATGTGCTGTTGAGCTTAGCTTAGTTAAACTCAAAGGTATTTTGTTAACATAA
65 TATGCTGCAAATGATATGC-CTTGAGCTGAGCGTAGTCAAACTCAAAGGTATTTTGTTGGCAGAA
* * * *
12135 AACCCTTCTAGCCTTGAGTTATGCTACAAATGATATGTCC
129 AACCCTTCTCGACTTAAGTTATGCTACAAATGATGTG-CC
* * * *
12175 TCGAAGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTT
1 TCGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTGAGTT
* * * * * * *
12240 ATGTTGCAAATAATATGTCATTGAGCTGAGCGTAGTCGAACTCAATGGTCTTTGGTTGGCA-AAT
66 ATGCTGCAAATGATATG-CCTTGAGCTGAGCGTAGTCAAACTCAAAGGTATTTTGTTGGCAGAA-
* * * * *
12304 AACCTTTCTTGCCTTGAGTTATGTTACAAATGATGTGCCC
129 AACCCTTCTCGACTTAAGTTATGCTACAAATGATGTG-CC
** * * * * * * * * * * *
12344 TAAAAGCTGAGTGTATTCGAACTTGAGGGTCTTTGGTTAGCATATAGCCTTTCTCGACTTAAGCT
1 TCGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTGAGTT
* * * * * *
12409 ATGCTGCAAATGATATGACGTTTAGCTGAGCGTAGTCGAACTCGAAGGTATTTTGGTGGCAGATA
66 ATGCTGCAAATGATATG-CCTTGAGCTGAGCGTAGTCAAACTCAAAGGTATTTTGTTGGCAGAAA
* * **
12474 GCCTTTCTCGACTTAAGTTATGCTGTAAATGATGTGCC
130 ACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCC
* * * * *
12512 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCCTTGG-TGACAGATAACCCTTCTAGCCTTGAGTT
1 TCGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTGAGTT
** * * * * * * * *
12576 ATGCTATAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACTC-GAGG--GTCT-TTGGCAGAT
66 ATGCTGCAAATGATATG-CCTTG-AGCTGAGCGTAGTCAAACTCAAAGGTATTTTGTTGGCAGAA
* *
12637 AACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
129 AACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCC
* * *
12676 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTT
1 TCGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTGAGTT
* * * **
12741 ATGCTACAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTTGGTGGCAGTTA
66 ATGCTGCAAATGATATGCCTT-GAGCTGAGCGTAGTCAAACTCAAAGGTATTTTGTTGGCAGAAA
* * *
12806 GCCCTTCTAGCCTTAAGTTAT
130 ACCCTTCTCGACTTAAGTTAT
12827 ATTACCGATA
Statistics
Matches: 534, Mismatches: 107, Indels: 23
0.80 0.16 0.03
Matches are distributed among these distances:
164 99 0.19
165 48 0.09
167 40 0.07
168 75 0.14
169 270 0.51
170 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (167 bp):
TCGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTGAGTT
ATGCTGCAAATGATATGCCTTGAGCTGAGCGTAGTCAAACTCAAAGGTATTTTGTTGGCAGAAAA
CCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCC
Found at i:12291 original size:84 final size:82
Alignment explanation
Indices: 12010--12826 Score: 624
Period size: 84 Copynumber: 9.8 Consensus size: 82
12000 AAGTCTTCGA
* * * * * * * *
12010 AGCTGAGCATAGCCGAACTCGAAGGTTTTTGGTTGGAAAATAACCCTTCTTA-CCTTGAGCTATA
1 AGCTGAGCGTAGTCGAACTC-AAGGTCTTTGGTTGGCAGATAACCCTTC-TAGCCTTAAGTTATG
* * * *
12074 TTGCAAATGATGTGCTGTTG
64 CTACAAATGATATGC-CTTG
* * ** * * ** * * *
12094 AGCTTAGCTTAGTTAAACTCAAAGGTATTTTGTTAACATAAAACCCTTCTAGCCTTGAGTTATGC
1 AGCTGAGCGTAGTCGAACTC-AAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGC
*
12159 TACAAATGATATGTCCTCG
65 TACAAATGATATG-CCTTG
* * * *
12178 AAGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
1 -AGCTGAGCGTAGTCGAACTC-AAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATG
* * * *
12243 TTGCAAATAATATGTCATTG
64 CTACAAATGATATG-CCTTG
* * * * *
12263 AGCTGAGCGTAGTCGAACTCAATGGTCTTTGGTTGGCAAATAACCTTTCTTGCCTTGAGTTATGT
1 AGCTGAGCGTAGTCGAACTCAA-GGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGC
* **
12328 TACAAATGATGTGCCCTAAA
65 TACAAATGATATG-CCT-TG
* * * * * * * * * * *
12348 AGCTGAGTGTATTCGAACTTGAGGGTCTTTGGTTAGCATATAGCCTTTCTCGACTTAAGCTATGC
1 AGCTGAGCGTAGTCGAAC-TCAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGC
* * *
12413 TGCAAATGATATGACGTTT
65 TACAAATGATATG-CCTTG
* * * * *
12432 AGCTGAGCGTAGTCGAACTCGAAGGTATTTTGG-TGGCAGATAGCCTTTCTCGACTTAAGTTATG
1 AGCTGAGCGTAGTCGAACTC-AAGGT-CTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATG
** *
12496 CTGTAAATGATGTGCCTTGG
64 CTACAAATGATATGCCTT-G
* * *
12516 AGCTGAGCGTAGTCGAACTCGAAGGTCCTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGC
1 AGCTGAGCGTAGTCGAACTC-AAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGC
* * *
12580 TATAAATGATGTGCCCTCG
65 TACAAATGATATG-CCTTG
* * * * * * *
12599 AAGCTGAGTGTAATCAAACTCGAGGGTC--T--TTGGCAGATAACCCTTCTCGACTTAAGCTATG
1 -AGCTGAGCGTAGTCGAACTC-AAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATG
* *
12660 CTGCAAATGATGTGCCTTGG
64 CTACAAATGATATGCCTT-G
*
12680 AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGC
1 AGCTGAGCGTAGTCGAACTC-AAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGC
12745 TACAAATGATATGCCTTGG
65 TACAAATGATATGCCTT-G
* * *
12764 AGCTGAGCGTAGTCAAACTCAAAGGTCTTTTGG-TGGCAGTTAGCCCTTCTAGCCTTAAGTTAT
1 AGCTGAGCGTAGTCGAACTC-AAGGTC-TTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTAT
12827 ATTACCGATA
Statistics
Matches: 593, Mismatches: 122, Indels: 36
0.79 0.16 0.05
Matches are distributed among these distances:
80 26 0.04
81 39 0.07
82 2 0.00
83 50 0.08
84 337 0.57
85 137 0.23
86 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (82 bp):
AGCTGAGCGTAGTCGAACTCAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGCT
ACAAATGATATGCCTTG
Found at i:12719 original size:248 final size:250
Alignment explanation
Indices: 12135--12826 Score: 883
Period size: 248 Copynumber: 2.8 Consensus size: 250
12125 GTTAACATAA
* * * * * * *
12135 AACCCTTCTAGCCTTGAGTTATGCTACAAATGATATGTCCTCGAAGCTGAGCGTAGTCGAACTCG
1 AACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAGTCGAACTCG
* * * *
12200 AGGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATGTTGCAAATAATATGTCATT-GA
66 AAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-CCTTGGA
* * * *
12264 GCTGAGCGTAGTCGAACTCAATGGTCTTTGGTTGGCAAATAACCTTTCTTGCCTTGAGTTATGTT
130 GCTGAGCGTAGTCGAACTCAA-GGTCTTTGG-TGGCAGATAACCCTTCTAGCCTTGAGTTATGCT
* * * *
12329 ACAAATGATGTGCCCTAAAAGCTGAGTGTATTCGAACTTGAGGGTCTTTGGTTAGCAT
193 ACAAATGATGTGCCCTAAAAGCTGAGTGTAATCAAACTCGAGGGTCTTTGGTCAGCAT
* * *
12387 ATAGCCTTTCTCGACTTAAGCTATGCTGCAAATGATATGACGTT-TAGCTGAGCGTAGTCGAACT
1 A-A-CCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAGTCGAACT
* * * *
12451 CGAAGGTATTTTGG-TGGCAGATAGCCTTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCTTG
64 CGAAGGT-CTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTG
* *
12515 GAGCTGAGCGTAGTCGAACTCGAAGGTCCTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGC
128 GAGCTGAGCGTAGTCGAACTC-AAGGTCTTTGGTGGCAGATAACCCTTCTAGCCTTGAGTTATGC
* **
12580 TATAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTCTTTGG-CAG-AT
192 TACAAATGATGTGCCCTAAAAGCTGAGTGTAATCAAACTCGAGGGTCTTTGGTCAGCAT
* *
12637 AACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCG
1 AACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAGTCGAACTCG
* * * * *
12701 AAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATATGCCTTGGAG
66 AAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAG
* * * *
12766 CTGAGCGTAGTCAAACTCAAAGGTCTTTTGGTGGCAGTTAGCCCTTCTAGCCTTAAGTTAT
131 CTGAGCGTAGTCGAACTC-AAGGTC-TTTGGTGGCAGATAACCCTTCTAGCCTTGAGTTAT
12827 ATTACCGATA
Statistics
Matches: 381, Mismatches: 51, Indels: 19
0.84 0.11 0.04
Matches are distributed among these distances:
247 8 0.02
248 127 0.33
249 31 0.08
250 3 0.01
251 2 0.01
252 77 0.20
253 95 0.25
254 38 0.10
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (250 bp):
AACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAGTCGAACTCG
AAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAG
CTGAGCGTAGTCGAACTCAAGGTCTTTGGTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTACA
AATGATGTGCCCTAAAAGCTGAGTGTAATCAAACTCGAGGGTCTTTGGTCAGCAT
Found at i:13996 original size:83 final size:87
Alignment explanation
Indices: 13904--14130 Score: 239
Period size: 95 Copynumber: 2.6 Consensus size: 87
13894 GGCTAGCTGA
*
13904 ATCCATAAAGTCGGGGCATTTAACCAATTACTCTAGAGGGACAACTCAA-TAT-GTA-AA-CACC
1 ATCCATAAAGTCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAATTATAGTATAATCACC
* *
13965 TTTATCAAGTTAGCTGAATCTT
66 TTTATCAAGCTAGCTGAATATT
* * *
13987 ATCCATAAAGCCAGGGCATTTAACCAATTGC-CTTAGAGGGACATCTCAAGCTTTATTGTATAGT
1 ATCCATAAAGTCGGGGCATTTAACCAATTGCTC-TAGAGGGACAACTC-A-----A-T-TATAGT
* * *
14051 ATAATTACCTTTATCAGGCTAGTTGAATATT
57 ATAATCACCTTTATCAAGCTAGCTGAATATT
* *
14082 ATCCATAAAGTCGGGGCATTTAACTAATTGCTTTAGAGGGACAACTCAA
1 ATCCATAAAGTCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAA
14131 GCTTTATTGT
Statistics
Matches: 116, Mismatches: 14, Indels: 22
0.76 0.09 0.14
Matches are distributed among these distances:
82 1 0.01
83 41 0.35
84 1 0.01
89 2 0.02
92 3 0.03
93 3 0.03
94 3 0.03
95 62 0.53
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (87 bp):
ATCCATAAAGTCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAATTATAGTATAATCACC
TTTATCAAGCTAGCTGAATATT
Found at i:14130 original size:95 final size:94
Alignment explanation
Indices: 13962--14147 Score: 282
Period size: 95 Copynumber: 2.0 Consensus size: 94
13952 ATATGTAAAC
* *
13962 ACCTTTATCAAGTTAGCTGAATCTTATCCATAAAGCCAGGGCATTTAACCAATTGCCTTAGAGGG
1 ACCTTTATCAAGCTAGCTGAATATTATCCATAAAGCCAGGGCATTTAACCAATTGCCTTAGAGGG
*
14027 ACATCTCAAGCTTTATTGTATAGTATAATT
66 ACAACTCAAGCTTTATTGTATA-TATAATT
* * * * * *
14057 ACCTTTATCAGGCTAGTTGAATATTATCCATAAAGTCGGGGCATTTAACTAATTGCTTTAGAGGG
1 ACCTTTATCAAGCTAGCTGAATATTATCCATAAAGCCAGGGCATTTAACCAATTGCCTTAGAGGG
14122 ACAACTCAAGCTTTATTGTATATATA
66 ACAACTCAAGCTTTATTGTATATATA
14148 TAATATATAA
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
94 4 0.05
95 78 0.95
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (94 bp):
ACCTTTATCAAGCTAGCTGAATATTATCCATAAAGCCAGGGCATTTAACCAATTGCCTTAGAGGG
ACAACTCAAGCTTTATTGTATATATAATT
Found at i:18045 original size:13 final size:13
Alignment explanation
Indices: 18029--18086 Score: 50
Period size: 14 Copynumber: 4.5 Consensus size: 13
18019 CAAAATAAAT
18029 AAAATAAATATAA
1 AAAATAAATATAA
*
18042 AAAATGAAATAGAA
1 AAAAT-AAATATAA
* *
18056 ATAA-AAATA-AG
1 AAAATAAATATAA
18067 AAAAT-AATATAA
1 AAAATAAATATAA
18079 GAAAATAA
1 -AAAATAA
18087 TAATAATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
11 8 0.23
12 6 0.17
13 10 0.29
14 11 0.31
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (13 bp):
AAAATAAATATAA
Found at i:18063 original size:39 final size:38
Alignment explanation
Indices: 18020--18158 Score: 108
Period size: 39 Copynumber: 3.6 Consensus size: 38
18010 GGAAGCAAAC
18020 AAAATAAATAAAATAAATATAAAAAATGAAATAGAAATA
1 AAAATAAATAAAATAAATATAAAAAATGAAATA-AAATA
* * *
18059 AAAAT-AAGAAAAT-AATATAAGAAAATAATAATAATATA
1 AAAATAAATAAAATAAATATAA-AAAATGA-AATAAAATA
** * *
18097 TACCATAAAT-AAATAAATA-AGAACAA-GAAAAAAAATA
1 -AAAATAAATAAAATAAATATA-AAAAATGAAATAAAATA
*
18134 AAAATTGGAATAAAATAAATATAAA
1 AAAA-T-AAATAAAATAAATATAAA
18159 TATAAACCCA
Statistics
Matches: 77, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
36 2 0.03
37 15 0.19
38 21 0.27
39 31 0.40
40 8 0.10
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (38 bp):
AAAATAAATAAAATAAATATAAAAAATGAAATAAAATA
Found at i:18078 original size:19 final size:18
Alignment explanation
Indices: 18029--18096 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 18
18019 CAAAATAAAT
*
18029 AAAATAAATATAAAAAATG
1 AAAAT-AATATAAAAAAAG
*
18048 -AAATAGAAATAAAAATAAG
1 AAAATA-ATATAAAAA-AAG
* *
18067 AAAATAATATAAGAAAAT
1 AAAATAATATAAAAAAAG
18085 AATAATAATATA
1 AA-AATAATATA
18097 TACCATAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
17 1 0.03
18 16 0.40
19 18 0.45
20 5 0.12
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (18 bp):
AAAATAATATAAAAAAAG
Found at i:18088 original size:13 final size:14
Alignment explanation
Indices: 18029--18086 Score: 63
Period size: 13 Copynumber: 4.5 Consensus size: 14
18019 CAAAATAAAT
18029 AAAATAAATATAA-
1 AAAATAAATATAAG
*
18042 AAAATGAA-AT-AG
1 AAAATAAATATAAG
*
18054 -AAATAAAAATAAG
1 AAAATAAATATAAG
18067 AAAAT-AATATAAG
1 AAAATAAATATAAG
18080 AAAATAA
1 AAAATAA
18087 TAATAATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
11 7 0.19
12 4 0.11
13 21 0.57
14 5 0.14
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (14 bp):
AAAATAAATATAAG
Found at i:18485 original size:2 final size:2
Alignment explanation
Indices: 18472--18502 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
18462 AAAAGGTAAA
*
18472 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18503 ATTATAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:20798 original size:22 final size:22
Alignment explanation
Indices: 20756--20799 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
20746 AACTATATTG
* * *
20756 AAATAGTTTATTTGGTTATTTA
1 AAATAATTTATTTGATAATTTA
20778 AAATAATTTATTTGATAATTTA
1 AAATAATTTATTTGATAATTTA
20800 TTTTGAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (22 bp):
AAATAATTTATTTGATAATTTA
Found at i:25265 original size:18 final size:18
Alignment explanation
Indices: 25231--25266 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
25221 ATATAGAGTA
*
25231 GTATCGGTACCCCTTTTG
1 GTATCGGTACCACTTTTG
*
25249 GTATCGGTACCATTTTTG
1 GTATCGGTACCACTTTTG
25267 CATTCTGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.42
Consensus pattern (18 bp):
GTATCGGTACCACTTTTG
Found at i:26765 original size:19 final size:20
Alignment explanation
Indices: 26729--26776 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
26719 TCAAAATCCT
* *
26729 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATTCCATTTTAG
26749 TTTTCAAAA-TCCATTTTAG
1 TTTTCAAAATTCCATTTTAG
*
26768 CTTTCAAAA
1 TTTTCAAAA
26777 AAATCATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.48
Consensus pattern (20 bp):
TTTTCAAAATTCCATTTTAG
Found at i:27906 original size:65 final size:65
Alignment explanation
Indices: 27783--27941 Score: 189
Period size: 65 Copynumber: 2.5 Consensus size: 65
27773 GCACTAAGAG
* * * *
27783 TGCATCGATGCATGAAGTGCATTCGATG-TTTCAAAATAACCTGAGTGCAACGATGCAT-GTCTT
1 TGCATCGATACATAAAATGCATTCGATGTTTTCAAAATAACCTGAGTGCAACGATGCATGGT-AT
27846 A
65 A
* * * *
27847 TGCATTGATACATAAAATGCATTCGATGTTTTTATAAA-AACCTGAGTGTATCGATGCATGGTAT
1 TGCATCGATACATAAAATGCATTCGATGTTTTCA-AAATAACCTGAGTGCAACGATGCATGGTAT
*
27911 G
65 A
*
27912 TGCATCGATGCATAAAATGCATTCGATGTT
1 TGCATCGATACATAAAATGCATTCGATGTT
27942 CAATTTATTC
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
64 24 0.30
65 52 0.64
66 5 0.06
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (65 bp):
TGCATCGATACATAAAATGCATTCGATGTTTTCAAAATAACCTGAGTGCAACGATGCATGGTATA
Found at i:28817 original size:20 final size:20
Alignment explanation
Indices: 28792--28855 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 20
28782 ACCCGATGGA
28792 TGCATCGATGCATGTCCTTG
1 TGCATCGATGCATGTCCTTG
*
28812 TGCATCGATG---G---AT-
1 TGCATCGATGCATGTCCTTG
28825 -GCATCGATGCATGTCCTTG
1 TGCATCGATGCATGTCCTTG
28844 TGCATCGATGCA
1 TGCATCGATGCA
28856 CATTCAAGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
12 9 0.26
14 1 0.03
15 1 0.03
17 1 0.03
18 1 0.03
20 21 0.62
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (20 bp):
TGCATCGATGCATGTCCTTG
Found at i:28826 original size:32 final size:32
Alignment explanation
Indices: 28785--28853 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
28775 TCCTAAAACC
28785 CGATGGATGCATCGATGCATGTCCTTGTGCAT
1 CGATGGATGCATCGATGCATGTCCTTGTGCAT
28817 CGATGGATGCATCGATGCATGTCCTTGTGCAT
1 CGATGGATGCATCGATGCATGTCCTTGTGCAT
28849 CGATG
1 CGATG
28854 CACATTCAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (32 bp):
CGATGGATGCATCGATGCATGTCCTTGTGCAT
Found at i:28902 original size:44 final size:45
Alignment explanation
Indices: 28821--28942 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 45
28811 GTGCATCGAT
* * * *
28821 GGATGCATCGATGCA-TGTCCTTGTGCATCGATGCACATTC-AA-
1 GGATGCATCGATGCACTTTCATAGTGTATCGATGCACATTCAAAG
*
28863 GGAGTGCATCGGTGCA-TCTTCAT-GATGTATCGATGCACATTCAAAG
1 GGA-TGCATCGATGCACT-TTCATAG-TGTATCGATGCACATTCAAAG
28909 GGATGCATCGATGCACTTTCATAGTGTATCGATG
1 GGATGCATCGATGCACTTTCATAGTGTATCGATG
28943 TATTAAGCAC
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
42 3 0.04
43 13 0.19
44 19 0.28
45 28 0.41
46 5 0.07
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (45 bp):
GGATGCATCGATGCACTTTCATAGTGTATCGATGCACATTCAAAG
Found at i:28905 original size:21 final size:23
Alignment explanation
Indices: 28843--28929 Score: 83
Period size: 23 Copynumber: 3.8 Consensus size: 23
28833 GCATGTCCTT
28843 GTGCATCGATGCACATTCAAGGA
1 GTGCATCGATGCACATTCAAGGA
* *
28866 GTGCATCGGTGCATC-TTC-ATGA
1 GTGCATCGATGCA-CATTCAAGGA
*
28888 -TGTATCGATGCACATTCAAAGG-
1 GTGCATCGATGCACATTC-AAGGA
*
28910 GATGCATCGATGCACTTTCA
1 G-TGCATCGATGCACATTCA
28930 TAGTGTATCG
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.02
21 13 0.25
22 3 0.06
23 18 0.35
24 16 0.31
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (23 bp):
GTGCATCGATGCACATTCAAGGA
Found at i:28941 original size:21 final size:23
Alignment explanation
Indices: 28847--28942 Score: 69
Period size: 21 Copynumber: 4.3 Consensus size: 23
28837 GTCCTTGTGC
*
28847 ATCGATGCACATTC-AAGGAGTGC
1 ATCGATGCACATTCAAAGGA-TGT
* *
28870 ATCGGTGCATC-TTC--ATGATGT
1 ATCGATGCA-CATTCAAAGGATGT
*
28891 ATCGATGCACATTCAAAGGGATGC
1 ATCGATGCACATTCAAA-GGATGT
* *
28915 ATCGATGCACTTTCATA-G-TGT
1 ATCGATGCACATTCAAAGGATGT
28936 ATCGATG
1 ATCGATG
28943 TATTAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
20 1 0.02
21 22 0.37
22 4 0.07
23 12 0.20
24 20 0.34
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (23 bp):
ATCGATGCACATTCAAAGGATGT
Found at i:32792 original size:21 final size:21
Alignment explanation
Indices: 32758--32797 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32748 GAGATTATTT
*
32758 TCATTTTTCAATTTTAAAATA
1 TCATTTTTCAATTTAAAAATA
32779 TCATTTTT-ATATTTAAAAA
1 TCATTTTTCA-ATTTAAAAA
32798 ATAGTTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTAAAAATA
Found at i:34810 original size:45 final size:46
Alignment explanation
Indices: 34739--34845 Score: 146
Period size: 45 Copynumber: 2.3 Consensus size: 46
34729 GGTGCACTAA
* * * * *
34739 GAGTGCACCGATACATAAAGTGCATTCGATG-TTTCA-AAATAGCCT
1 GAGTGCATCGATGCATAAAATACATTCGATGTTTTCATAAA-AACCT
34784 GAGTGCATCGATGCATAAAATACATTCGATGTTTTCATAAAAACCT
1 GAGTGCATCGATGCATAAAATACATTCGATGTTTTCATAAAAACCT
34830 GAGTGCATCGATGCAT
1 GAGTGCATCGATGCAT
34846 GGTATGTGCA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
45 27 0.49
46 25 0.45
47 3 0.05
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (46 bp):
GAGTGCATCGATGCATAAAATACATTCGATGTTTTCATAAAAACCT
Found at i:41340 original size:36 final size:36
Alignment explanation
Indices: 41308--41380 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
41298 AGAAATAGGC
41308 ATCGAAACAATAAGAACAAGAACGAAAAAAATAAGA
1 ATCGAAACAATAAGAACAAGAACGAAAAAAATAAGA
41344 ATCGAAACAATAAGAACAAGAACGAAAAAAATAAGA
1 ATCGAAACAATAAGAACAAGAACGAAAAAAATAAGA
41380 A
1 A
41381 GAAGAAAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.67, C:0.11, G:0.14, T:0.08
Consensus pattern (36 bp):
ATCGAAACAATAAGAACAAGAACGAAAAAAATAAGA
Found at i:41341 original size:21 final size:21
Alignment explanation
Indices: 41316--41386 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 21
41306 GCATCGAAAC
41316 AATAAGAACAAGAACGAAAAA
1 AATAAGAACAAGAACGAAAAA
* *
41337 AATAAG----A-ATCG-AAAC
1 AATAAGAACAAGAACGAAAAA
41352 AATAAGAACAAGAACGAAAAA
1 AATAAGAACAAGAACGAAAAA
*
41373 AATAAGAAGAAGAA
1 AATAAGAACAAGAA
41387 AATGATGTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
15 9 0.23
16 3 0.08
17 1 0.03
19 1 0.03
20 3 0.08
21 22 0.56
ACGTcount: A:0.69, C:0.08, G:0.15, T:0.07
Consensus pattern (21 bp):
AATAAGAACAAGAACGAAAAA
Found at i:41507 original size:20 final size:20
Alignment explanation
Indices: 41482--41524 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
41472 TCTTAAGGAA
41482 CATTTAGGACCATATAGATG
1 CATTTAGGACCATATAGATG
* * *
41502 CATTTAGGATCATGTAGTTG
1 CATTTAGGACCATATAGATG
41522 CAT
1 CAT
41525 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:43737 original size:4 final size:4
Alignment explanation
Indices: 43728--44247 Score: 295
Period size: 4 Copynumber: 130.0 Consensus size: 4
43718 GTGTCTTGGC
* * *
43728 CACA CACA CACA CACA CACA CACG CACA CACG CACA CACA CGCA CACA
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * * * *
43776 CACG CACA CACG CACA CGCA CACA CACG CACA CACA CGCA CACA CACG
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * *
43824 CACA CACA CGCA CACA CACG CACA CACA CGCA CACA CACG CACA CACA
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * * *
43872 CGCA CACA CACG CACA CACA CGCA CACA CACG CACA CACG CACA CACA
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * * * * *
43920 CGCA CACA CACG CACA CAAA CACA CGCA CGCA CGCA -AGCA CACG CACA
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CA-CA CACA CACA
* * * * * * * *
43968 CACA CGCA CACA CACG CACA CACA CGCA CACA AACG CACA CAAA CGCG
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * * * * * * *
44016 CACA CACA CGCA AACG CGCG CACA CACA CGCA CACA CACG CACG CACG
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * * * * * * * * * *
44064 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * * * * * * * * * *
44112 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * * * * * * * * * * *
44160 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
* * *
44208 CACG CACG CACA CGCA CACA CACA CACA CACA CACA CACA
1 CACA CACA CACA CACA CACA CACA CACA CACA CACA CACA
44248 GTTTTAAAAA
Statistics
Matches: 438, Mismatches: 76, Indels: 4
0.85 0.15 0.01
Matches are distributed among these distances:
4 437 1.00
5 1 0.00
ACGTcount: A:0.36, C:0.49, G:0.15, T:0.00
Consensus pattern (4 bp):
CACA
Found at i:43757 original size:20 final size:20
Alignment explanation
Indices: 43732--44247 Score: 435
Period size: 20 Copynumber: 25.6 Consensus size: 20
43722 CTTGGCCACA
43732 CACACACACACACACACACG
1 CACACACACACACACACACG
* *
43752 CACACACGCACACACACGCACA
1 CACACA--CACACACACACACG
* *
43774 CACACGCACACACGCACACG
1 CACACACACACACACACACG
*
43794 CACACACACGCACACACACG
1 CACACACACACACACACACG
*
43814 CACACACACGCACACACACG
1 CACACACACACACACACACG
*
43834 CACACACACGCACACACACG
1 CACACACACACACACACACG
*
43854 CACACACACGCACACACACG
1 CACACACACACACACACACG
*
43874 CACACACACGCACACACACG
1 CACACACACACACACACACG
*
43894 --CACACACACGCACACACG
1 CACACACACACACACACACG
*
43912 CACACACACGCACACACACG
1 CACACACACACACACACACG
* *
43932 CACACAAACACACGCACGCACG
1 CACAC--ACACACACACACACG
*
43954 CA-AGCACACGCACACACACG
1 CACA-CACACACACACACACG
*
43974 CACACACACGCACACACACG
1 CACACACACACACACACACG
* * *
43994 CACACAAACGCACACAAACGCG
1 CACAC--ACACACACACACACG
* * * *
44016 CACACACACGCAAACGCGCG
1 CACACACACACACACACACG
*
44036 CACACACACGCACACACACG
1 CACACACACACACACACACG
* * * *
44056 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* * * *
44076 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* * * *
44096 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* * * *
44116 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* * * *
44136 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* * * *
44156 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* * * *
44176 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* * * *
44196 CACGCACGCACGCACGCACG
1 CACACACACACACACACACG
* *
44216 CACACGCACACACACACACA
1 CACACACACACACACACACG
44236 CACACACACACA
1 CACACACACACA
44248 GTTTTAAAAA
Statistics
Matches: 443, Mismatches: 43, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.04
20 377 0.85
21 2 0.00
22 48 0.11
ACGTcount: A:0.36, C:0.49, G:0.15, T:0.00
Consensus pattern (20 bp):
CACACACACACACACACACG
Found at i:45116 original size:27 final size:27
Alignment explanation
Indices: 45086--45155 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
45076 TGATGTGGAC
* *
45086 TTTCAAATTCAAAGTGATGCTATGAAG
1 TTTCAAGTTCAAAGTGATACTATGAAG
45113 TTTCAAGTTCAAAGTGATACTATGAAG
1 TTTCAAGTTCAAAGTGATACTATGAAG
45140 TTTCAAGTTCAAAGTG
1 TTTCAAGTTCAAAGTG
45156 GTGATGGTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (27 bp):
TTTCAAGTTCAAAGTGATACTATGAAG
Found at i:47226 original size:25 final size:25
Alignment explanation
Indices: 47192--47247 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
47182 AATGCTGTGT
*
47192 TTTTTTATTTAATGTGAAGTAATAA
1 TTTTTTATTTAATGTAAAGTAATAA
* *
47217 TTTTTTATTTTATGTAAAGTAATGA
1 TTTTTTATTTAATGTAAAGTAATAA
47242 TTTTTT
1 TTTTTT
47248 GTTATTTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (25 bp):
TTTTTTATTTAATGTAAAGTAATAA
Found at i:51445 original size:30 final size:29
Alignment explanation
Indices: 51355--51445 Score: 112
Period size: 30 Copynumber: 3.0 Consensus size: 29
51345 AATTTAAATG
*
51355 ATATTTTATTTAAAATTTAGGGTGAAAATT-
1 ATATTTTA-TTAAAATTTAGTGT-AAAATTA
*
51385 ATATTTTATCTAAAATTTAGTGTTAAATTA
1 ATATTTTAT-TAAAATTTAGTGTAAAATTA
*
51415 ATATTTTATGAAAATTTAGTGATAAAATTA
1 ATATTTTATTAAAATTTAGTG-TAAAATTA
51445 A
1 A
51446 AAATTAATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
29 17 0.31
30 37 0.69
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.46
Consensus pattern (29 bp):
ATATTTTATTAAAATTTAGTGTAAAATTA
Found at i:53259 original size:18 final size:19
Alignment explanation
Indices: 53236--53280 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
53226 ATTAATTTAA
53236 ATAAAAT-TGATAATTTATT
1 ATAAAATATGAT-ATTTATT
*
53255 A-AAAATATTATATTTATT
1 ATAAAATATGATATTTATT
53273 ATAAAATA
1 ATAAAATA
53281 ATAGAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
ATAAAATATGATATTTATT
Found at i:53965 original size:28 final size:27
Alignment explanation
Indices: 53929--54002 Score: 94
Period size: 28 Copynumber: 2.7 Consensus size: 27
53919 ACTGTAAACA
*
53929 CCATTTTTCAACACCAACACTTACCACC
1 CCATTTTTCAACACCAACAC-CACCACC
*
53957 CCATTTTTCAACACCAACACCACCATC
1 CCATTTTTCAACACCAACACCACCACC
* *
53984 CTATTTTTTCAACATCAAC
1 CCA-TTTTTCAACACCAAC
54003 CCCATCATCC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 7 0.17
28 34 0.83
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.28
Consensus pattern (27 bp):
CCATTTTTCAACACCAACACCACCACC
Found at i:57424 original size:65 final size:65
Alignment explanation
Indices: 57312--57439 Score: 159
Period size: 65 Copynumber: 2.0 Consensus size: 65
57302 TTCGACTCGT
** * * * *
57312 TGTTCGTTAAGTTTGTTAAATTTTACTTGACTTATGCTCATTAAAAAAATTTGTTGCTAAACTTG
1 TGTTCGTTAACCTCGTTAAATTTTACTCGACTCATGCTCATTAAAAAAACTTGTTGCTAAACTTG
* * *
57377 TGTTCGTTAACCTCGTTAAAATTTTACTCGACTCGTGCTCGTT-AAAAAACTTGTTGCTCAACT
1 TGTTCGTTAACCTCGTT-AAATTTTACTCGACTCATGCTCATTAAAAAAACTTGTTGCTAAACT
57440 CGTGCTCATT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
65 32 0.60
66 21 0.40
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.42
Consensus pattern (65 bp):
TGTTCGTTAACCTCGTTAAATTTTACTCGACTCATGCTCATTAAAAAAACTTGTTGCTAAACTTG
Found at i:57935 original size:15 final size:17
Alignment explanation
Indices: 57897--57940 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 17
57887 TGTAAAGGTC
57897 TCAAGTCGAGCTCGAAT
1 TCAAGTCGAGCTCGAAT
**
57914 TTGAGTCGAG-TC-AAT
1 TCAAGTCGAGCTCGAAT
57929 TCAAGTCGAGCT
1 TCAAGTCGAGCT
57941 TTTATCGAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
15 11 0.50
16 3 0.14
17 8 0.36
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (17 bp):
TCAAGTCGAGCTCGAAT
Found at i:60326 original size:9 final size:9
Alignment explanation
Indices: 60312--60337 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
60302 ACCTTGTTCA
60312 TCATCTTGT
1 TCATCTTGT
60321 TCATCTTGT
1 TCATCTTGT
60330 TCATCTTG
1 TCATCTTG
60338 ATCAAGAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.23, G:0.12, T:0.54
Consensus pattern (9 bp):
TCATCTTGT
Found at i:61269 original size:18 final size:18
Alignment explanation
Indices: 61242--61276 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
61232 TGATTAAAAG
61242 TATAGAACTTTATTAAAC
1 TATAGAACTTTATTAAAC
*
61260 TATAGTACTTTATTAAA
1 TATAGAACTTTATTAAA
61277 GTACTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (18 bp):
TATAGAACTTTATTAAAC
Found at i:64429 original size:20 final size:20
Alignment explanation
Indices: 64406--64591 Score: 161
Period size: 20 Copynumber: 9.3 Consensus size: 20
64396 AATATATAAA
64406 TCGCAACACATAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
*
64426 TCGCAACACAGAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
*
64446 TCGCAACGCGAT-AGTCAAAT
1 TCGCAACAC-ATAAGTCAAAT
*
64466 TTGCAACAC-TGAAGTCAAAT
1 TCGCAACACAT-AAGTCAAAT
* **
64486 TCGCAACGCGAATCTGT-AAA-
1 TCGCAACAC--ATAAGTCAAAT
* **
64506 TCGCAACGCGAATTTGT-AAA-
1 TCGCAACAC--ATAAGTCAAAT
*
64526 TCGCAACACAGAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
64546 TCGCAACACATAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
*
64566 TCGCAACGCGA-AAGTCAAAT
1 TCGCAACAC-ATAAGTCAAAT
64586 TCGCAA
1 TCGCAA
64592 AGCGCGTTTA
Statistics
Matches: 141, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
18 4 0.03
19 3 0.02
20 126 0.89
21 5 0.04
22 2 0.01
23 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.19
Consensus pattern (20 bp):
TCGCAACACATAAGTCAAAT
Found at i:64472 original size:60 final size:60
Alignment explanation
Indices: 64381--64591 Score: 240
Period size: 60 Copynumber: 3.5 Consensus size: 60
64371 ACCCAGTTTC
*
64381 CAAATTCGCAACGCGAATA-TATAAATCGCAACACATAAGTCAAATTCGCAACACAGAAGT
1 CAAATTCGCAACGCGAATAGTA-AATTCGCAACACATAAGTCAAATTCGCAACACAGAAGT
* *
64441 CAAATTCGCAACGCG-ATAGTCAAATTTGCAACAC-TGAAGTCAAATTCGCAACGC-GAA-T
1 CAAATTCGCAACGCGAATAGT-AAATTCGCAACACAT-AAGTCAAATTCGCAACACAGAAGT
* * *
64499 CTGTAAA-TCGCAACGCGAATTTGTAAA-TCGCAACACAGAAGTCAAATTCGCAACACATAAGT
1 C---AAATTCGCAACGCGAA-TAGTAAATTCGCAACACATAAGTCAAATTCGCAACACAGAAGT
64561 CAAATTCGCAACGCGAA-AGTCAAATTCGCAA
1 CAAATTCGCAACGCGAATAGT-AAATTCGCAA
64592 AGCGCGTTTA
Statistics
Matches: 128, Mismatches: 9, Indels: 28
0.78 0.05 0.17
Matches are distributed among these distances:
58 4 0.03
59 13 0.10
60 96 0.75
61 10 0.08
62 5 0.04
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (60 bp):
CAAATTCGCAACGCGAATAGTAAATTCGCAACACATAAGTCAAATTCGCAACACAGAAGT
Found at i:64729 original size:20 final size:20
Alignment explanation
Indices: 64703--64754 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
64693 TCGATAATTA
64703 GCGTTGCGAATTTGAAAATC
1 GCGTTGCGAATTTGAAAATC
* *
64723 TCGTTGCGAATTTGTAAATC
1 GCGTTGCGAATTTGAAAATC
*
64743 GCGTTGCTAATT
1 GCGTTGCGAATT
64755 ACCGATATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (20 bp):
GCGTTGCGAATTTGAAAATC
Found at i:64808 original size:20 final size:20
Alignment explanation
Indices: 64780--64826 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
64770 CAGTACTATT
*
64780 GCAATGCGATTTACAAATTC
1 GCAACGCGATTTACAAATTC
*
64800 GCAACGCGATTTTCAAATTC
1 GCAACGCGATTTACAAATTC
64820 GCAACGC
1 GCAACGC
64827 TAATTACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (20 bp):
GCAACGCGATTTACAAATTC
Found at i:64886 original size:57 final size:57
Alignment explanation
Indices: 64798--64962 Score: 280
Period size: 55 Copynumber: 2.9 Consensus size: 57
64788 ATTTACAAAT
64798 TCGCAACGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACAA
1 TCGCAACGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACAA
* *
64855 TCGCAACGCGATTTTCAAATTCGCAACGCTAATTATCG--ATAGGTAAACAGTACTA
1 TCGCAACGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACAA
* *
64910 TCGCAACGCGATTTACAAATTCACAACGCTAATTACCGATATAGGTAAACAGT
1 TCGCAACGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGT
64963 GTTGCGAAAA
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
55 51 0.50
57 50 0.50
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (57 bp):
TCGCAACGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACAA
Found at i:64980 original size:13 final size:13
Alignment explanation
Indices: 64962--64986 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64952 AGGTAAACAG
64962 TGTTGCGAAAATT
1 TGTTGCGAAAATT
64975 TGTTGCGAAAAT
1 TGTTGCGAAAAT
64987 AAACGCGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (13 bp):
TGTTGCGAAAATT
Found at i:65021 original size:20 final size:20
Alignment explanation
Indices: 64996--65137 Score: 102
Period size: 20 Copynumber: 7.3 Consensus size: 20
64986 TAAACGCGCT
*
64996 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTCGTG
* *
65016 TTGCG-ATTTCA-ATTCGTG
1 TTGCGAATTTGACTTTCGTG
* *
65034 -TGCG-ATTT-ACAGATTCGCG
1 TTGCGAATTTGAC--TTTCGTG
65053 TTGCGAATTTGAC-TTCAGTG
1 TTGCGAATTTGACTTTC-GTG
* * *
65073 TTGCGAATTTGAGTATCGCG
1 TTGCGAATTTGACTTTCGTG
*
65093 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTCGTG
*
65113 -TACGAATTTGAC-TTCTGTG
1 TTGCGAATTTGACTTTC-GTG
65132 TTGCGA
1 TTGCGA
65138 TTTAAAGATT
Statistics
Matches: 97, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
16 1 0.01
17 8 0.08
18 7 0.07
19 28 0.29
20 45 0.46
21 6 0.06
22 2 0.02
ACGTcount: A:0.18, C:0.15, G:0.25, T:0.42
Consensus pattern (20 bp):
TTGCGAATTTGACTTTCGTG
Found at i:65156 original size:20 final size:20
Alignment explanation
Indices: 65131--65203 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 20
65121 TGACTTCTGT
65131 GTTGCG-ATTTAAAGATTCGC
1 GTTGCGAATTTAAA-ATTCGC
65151 GTTGCGAATTTGGAAAA-TCGC
1 GTTGCGAATTT--AAAATTCGC
** *
65172 AATGCG-ATTTACATATTCGC
1 GTTGCGAATTTA-AAATTCGC
65192 GTTGCGAATTTA
1 GTTGCGAATTTA
65204 GAAACTGGGT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
18 1 0.02
19 2 0.05
20 18 0.43
21 17 0.40
22 1 0.02
23 3 0.07
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.34
Consensus pattern (20 bp):
GTTGCGAATTTAAAATTCGC
Found at i:67887 original size:6 final size:6
Alignment explanation
Indices: 67876--68852 Score: 1519
Period size: 6 Copynumber: 164.5 Consensus size: 6
67866 TTTATGCTTG
67876 TCTATA TCTATA TCTATA TCTATA TCTA-A TC--TA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
67921 TCTATA TCTATA TCTATA TC--TA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
*
67967 TCTATA TCTATA TC-ATA TCTATA TCTATA TATATCTA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTA--TA TCTATA TCTATA
68016 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
* * *
68064 TCTATA TCTATA TCTATA TCTATC TCTATCTA TATATC TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTA--TA TCTATA TCTATA TCTATA
68114 TCTATA TCTATA TCTATA TC--TA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68160 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TC--TATA
68210 TCTATA TCTATA TCTATA TCTATA TCTA-A TCTATA TC--TA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68255 TCTATA TCTATA TCTATA TC--TA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68301 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68349 TCTATA TCTATA --TATA TCTATA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68395 TCTCTATA TCTATA TCTATA TCTATA TC--TA TCTATA TCTA-A TCTATA
1 --TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
*
68442 TCTATA TCTATA TCTATA TCTATA TCTATA TATATCTA TC-ATA TCTATATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTA--TA TCTATA TC--TATA
68493 TCTATA TCTATA TCTATATA TCTATA TCTATA T-TATA TCTATA TCTATA
1 TCTATA TCTATA TC--TATA TCTATA TCTATA TCTATA TCTATA TCTATA
68542 TCTATA TCTATA TCTATA TCTATA TCTATA TCTAT- TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68589 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68637 TCTATATA TCTATA TCTATA TCTATA TCTATA --TATA TCTATA TCTATA
1 TC--TATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68685 TCTATA TCTATA TCTATA TCTCTATA TCTATA TCTCTATA TC-ATA TCTATA
1 TCTATA TCTATA TCTATA --TCTATA TCTATA --TCTATA TCTATA TCTATA
68736 TCTATA TC--TA TCTATA TCTATA TCTATA --TATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68780 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
68828 TC--TA TCTATA TCTATA TCTATA TCT
1 TCTATA TCTATA TCTATA TCTATA TCT
68853 TTTACCTCTA
Statistics
Matches: 911, Mismatches: 10, Indels: 100
0.89 0.01 0.10
Matches are distributed among these distances:
4 43 0.05
5 37 0.04
6 777 0.85
7 1 0.00
8 53 0.06
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTATA
Done.