genome.fa.s3517.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003517.1 Hibiscus syriacus cultivar Beakdansim tig00007435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133176

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3602--3644	21	2.0	21	100	0	86	18	18	13	48	1.80
4244--4566	154	2.1	154	90	1	511	16	22	24	36	1.94
10521--10560	20	2.0	20	95	0	71	32	27	15	25	1.95
16460--16562	37	2.8	37	98	0	197	13	19	21	45	1.84
22471--22553	39	2.2	37	89	8	123	32	21	20	25	1.98
23102--23133	2	16.0	2	100	0	64	50	0	0	50	1.00
29742--29786	22	2.0	22	91	8	74	31	0	13	55	1.38
42780--42848	21	3.4	21	72	8	61	14	10	14	60	1.58
44919--44985	33	2.0	33	97	0	125	40	8	23	26	1.84
51613--51652	20	2.0	20	85	0	53	20	32	7	40	1.80
52875--52913	19	2.0	20	95	5	71	17	20	25	35	1.95
52875--52920	10	4.5	11	82	17	64	17	21	28	32	1.96
52876--52930	9	5.6	10	81	12	69	14	21	30	32	1.93
52934--53015	13	6.3	13	72	25	59	17	46	23	13	1.83
52933--53009	17	4.4	18	93	3	131	16	48	23	11	1.79
53045--53113	29	2.3	30	85	2	95	28	5	23	42	1.77
53816--53884	24	2.9	24	73	0	66	24	11	18	44	1.83
60106--60161	19	2.9	19	85	12	78	16	21	28	33	1.95
60106--60154	10	4.8	11	83	16	70	16	20	26	36	1.93
60107--60161	9	5.6	10	83	12	78	14	21	29	34	1.93
60165--60246	13	6.3	13	72	25	59	17	46	23	13	1.83
60164--60240	17	4.4	18	93	3	131	16	48	23	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60275--60330	29	2.0	29	85	3	78	32	5	21	41	1.76
61044--61111	24	2.9	24	73	2	66	25	11	19	44	1.84
68713--68757	20	2.2	20	84	4	54	48	6	17	26	1.72
68548--68797	83	3.0	83	85	1	360	43	10	12	33	1.77
69677--69714	20	1.9	20	88	0	58	15	26	26	31	1.96
70561--70600	2	19.5	2	89	5	62	52	2	0	45	1.14
72503--72557	20	2.7	21	91	5	94	21	40	14	23	1.90
79034--79145	35	3.2	35	85	0	134	36	0	21	41	1.60
84444--84706	53	4.9	53	87	1	357	21	26	21	30	1.99
85078--85286	42	5.1	42	70	16	145	33	22	16	27	1.96
85210--85301	42	2.2	42	94	0	157	32	21	21	23	1.98
85414--85520	42	2.6	41	80	2	133	28	22	23	25	1.99
85210--85637	214	2.0	215	91	0	696	31	18	15	34	1.92
97798--97831	2	17.0	2	100	0	68	50	0	0	50	1.00
102408--102490	39	2.1	39	88	4	123	37	21	22	18	1.94
104917--104960	16	2.8	17	80	13	58	27	0	4	68	1.09
106987--107075	39	2.3	39	80	5	99	23	24	16	34	1.95
107409--107481	38	1.9	38	83	5	94	19	8	16	56	1.65
108004--108589	293	2.0	293	96	0	1093	27	11	26	33	1.91
117521--117580	23	2.9	20	80	9	59	25	31	26	16	1.96
131867--132170	63	5.0	62	71	11	182	23	18	14	43	1.86
131761--132170	182	2.3	176	79	7	416	23	19	13	43	1.86

Tables:   1

The End!