genome.fa.s3518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003518.1 Hibiscus syriacus cultivar Beakdansim tig00007437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126981

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10919--11045	17	7.1	18	77	16	88	73	1	19	5	1.12
10923--11041	9	13.5	8	69	20	60	73	1	19	5	1.13
10936--11038	44	2.3	43	81	17	115	72	1	19	5	1.14
12184--12487	51	5.9	51	88	3	403	29	16	26	27	1.97
12181--12544	102	3.5	102	83	3	431	29	15	25	29	1.96
12181--12594	51	7.9	53	84	7	381	29	15	25	29	1.96
12398--12594	55	3.6	56	84	5	240	29	16	23	30	1.96
12399--12624	55	4.1	54	77	11	185	28	16	23	31	1.96
17545--17598	24	2.2	24	93	0	90	40	20	18	20	1.91
18461--18604	20	7.2	19	82	6	135	22	19	19	38	1.93
18461--18604	40	3.6	40	85	2	191	22	19	19	38	1.93
18461--18604	60	2.4	61	87	3	202	22	19	19	38	1.93
26807--27104	148	2.0	150	86	5	424	21	17	18	42	1.89
27345--27764	211	2.0	211	98	0	804	21	25	17	35	1.95
28083--28120	2	19.0	2	100	0	76	50	0	50	0	1.00
30431--30455	2	12.5	2	100	0	50	52	0	0	48	1.00
32345--32439	29	3.1	29	69	24	86	43	15	17	23	1.88
40343--40380	20	2.0	20	90	10	62	50	5	21	23	1.69
42208--42241	11	3.0	11	86	4	50	11	14	44	29	1.81
42255--42302	24	2.0	24	87	4	69	43	0	2	54	1.12
42345--42389	13	3.5	13	87	3	65	15	15	48	20	1.80
48003--48058	27	2.0	28	83	10	71	41	26	7	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48913--49056	35	4.1	35	93	0	225	25	16	21	36	1.94
61478--61516	2	19.5	2	100	0	78	48	0	0	51	1.00
62898--63189	117	2.5	117	87	2	417	31	33	15	19	1.93
64064--64089	10	2.6	10	100	0	52	30	11	38	19	1.87
64111--64261	29	5.3	28	82	9	137	43	17	5	32	1.74
64111--64277	56	2.9	55	83	7	192	42	17	5	34	1.74
70463--70754	117	2.5	117	88	2	426	31	33	15	19	1.93
71288--71321	2	17.0	2	100	0	68	50	0	0	50	1.00
71717--71844	29	4.6	29	82	12	151	43	18	5	32	1.73
71716--71849	55	2.4	55	83	12	157	41	18	5	34	1.73
76868--76920	21	2.5	21	84	0	70	20	26	18	33	1.96
76910--77036	20	6.3	20	83	3	166	39	19	18	22	1.92
76986--77046	20	3.0	20	88	4	61	36	19	21	22	1.95
77898--77951	24	2.2	24	86	0	81	18	18	20	42	1.89
80705--80893	30	6.3	30	96	0	335	30	24	23	22	1.99
82066--82110	21	2.1	21	87	0	63	15	24	28	31	1.96
84884--84937	2	27.0	2	96	0	99	50	1	0	48	1.11
85209--85306	30	3.3	30	94	2	164	29	25	23	21	1.99
85209--85323	60	1.9	58	84	3	149	31	25	23	20	1.98
86472--86516	21	2.1	21	87	0	63	15	24	28	31	1.96
89297--89346	2	25.0	2	95	0	91	50	2	0	48	1.12
89619--89776	59	2.7	60	93	3	266	29	25	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89619--89776	30	5.3	30	94	2	266	29	25	22	22	1.99
89619--89793	89	2.0	89	87	2	253	30	25	22	21	1.99
90947--90991	21	2.1	21	87	0	63	15	24	28	31	1.96
92604--92700	21	4.6	21	75	3	88	22	18	36	22	1.95
92593--92704	42	2.7	42	79	5	120	23	16	37	22	1.94
93184--93319	20	7.4	20	73	21	93	41	22	19	16	1.90
93204--93284	33	2.4	33	83	2	99	45	23	19	11	1.82
93362--93507	20	7.6	20	86	9	196	19	20	21	38	1.94
93348--93449	40	2.8	34	77	16	105	21	21	18	38	1.94
93326--93504	74	2.4	74	89	0	261	18	21	20	39	1.92
95380--95433	20	2.7	20	88	0	81	38	25	18	16	1.92
95457--95505	20	2.5	20	82	0	62	22	20	22	34	1.97
96096--96189	20	4.7	20	86	2	143	20	21	20	38	1.94
96096--96189	41	2.3	40	90	1	143	20	21	20	38	1.94
96189--96231	21	2.0	21	86	4	59	41	16	25	16	1.88
100914--100997	31	2.7	31	90	0	132	42	23	15	17	1.88
104276--106574	765	3.0	765	98	0	4436	31	15	21	31	1.94
107757--107799	20	2.2	20	86	0	59	34	16	13	34	1.88

Tables:   1

The End!