Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003519.1 Hibiscus syriacus cultivar Beakdansim tig00007438_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93259

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3083--3120
8
4.9
8
81
18
53
76
0
15
7
1.01
3091--3127
17
2.2
17
95
4
67
75
0
18
5
0.99
3083--3132
15
3.3
15
86
8
66
76
0
16
8
1.02
4447--4912
55
8.6
55
88
3
538
28
15
24
31
1.96
4498--4912
111
3.8
111
91
3
594
28
15
24
31
1.96
4549--4912
56
6.6
56
87
4
515
28
16
24
31
1.96
21036--21103
31
2.2
30
80
14
77
36
8
17
36
1.81
22123--22195
33
2.3
32
88
9
114
39
13
8
38
1.75
24562--24600
15
2.7
14
84
7
51
48
23
0
28
1.51
24693--24758
23
2.9
23
84
8
89
33
21
27
18
1.96
27014--27074
29
2.2
27
81
16
72
42
4
4
47
1.46
31446--31473
14
2.0
14
100
0
56
50
7
7
35
1.57
31993--32393
199
2.0
201
96
3
747
32
14
13
38
1.86
49930--49981
25
2.0
26
82
14
63
28
23
1
46
1.63
50643--50761
20
5.8
20
95
4
202
25
23
20
31
1.98
53980--54010
11
2.8
11
100
0
62
29
9
0
61
1.28
54768--54801
17
2.1
17
88
5
52
47
23
2
26
1.66
55255--55326
19
3.8
19
100
0
144
22
30
16
30
1.96
55275--55487
101
2.1
102
98
1
410
24
23
16
35
1.95
55378--55427
19
2.7
19
93
6
86
20
30
18
32
1.96
56203--56237
2
17.5
2
100
0
70
51
0
0
48
1.00
68853--68909
22
2.7
21
76
10
62
33
1
7
57
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68982--69061
33
2.5
33
97
2
153
11
10
41
37
1.74
69596--69635
17
2.3
18
86
4
55
32
22
10
35
1.87
69596--69643
18
2.7
17
84
9
53
31
25
8
35
1.85
76413--76463
21
2.4
21
90
0
75
19
9
5
64
1.44
76764--76794
2
15.5
2
100
0
62
51
0
0
48
1.00
80944--81079
35
3.9
35
86
0
164
36
1
22
39
1.63
80944--81076
70
1.9
70
85
0
185
36
1
21
40
1.63
84452--84512
17
3.5
17
70
22
54
34
8
3
54
1.47
86155--86254
45
2.1
49
85
7
136
29
9
20
42
1.82

Tables:   1

The End!