Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000352.1 Hibiscus syriacus cultivar Beakdansim tig00000646_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150517

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6750--6780
14
2.2
14
100
0
62
61
0
12
25
1.32
9883--9941
31
1.9
31
83
13
77
66
1
1
30
1.12
9916--9967
22
2.3
22
83
9
61
59
0
0
40
0.97
10135--10164
3
10.0
3
100
0
60
66
0
0
33
0.92
11633--11694
16
4.1
15
76
12
65
50
0
0
50
1.00
13885--13915
2
15.5
2
100
0
62
48
0
0
51
1.00
15073--15186
41
2.8
41
94
2
196
50
42
0
7
1.29
15582--15648
22
3.0
22
73
18
66
44
7
0
47
1.31
29454--29496
14
3.1
14
96
0
77
48
9
6
34
1.62
33546--33706
60
2.7
59
80
3
178
33
18
4
44
1.69
33903--34260
41
8.8
41
77
3
337
29
17
18
34
1.94
34319--34377
25
2.4
25
100
0
118
15
28
0
55
1.40
36430--36468
12
3.2
12
85
3
51
5
17
0
76
0.96
37999--38026
12
2.3
12
100
0
56
78
7
0
14
0.95
39369--40035
51
12.9
51
90
2
920
28
26
15
29
1.96
40297--40329
17
1.9
17
88
11
50
30
27
3
39
1.72
41349--41412
27
2.4
26
82
15
85
6
23
0
70
1.10
41364--41402
19
2.1
19
85
9
53
7
25
0
66
1.18
41433--41471
18
2.1
19
90
4
62
5
20
0
74
1.01
51111--51208
44
2.1
46
88
7
146
39
21
11
27
1.87
54448--54496
2
25.0
2
91
4
82
51
0
0
48
1.00
55364--55402
15
2.6
15
95
0
69
17
17
28
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62315--62348
13
2.6
14
86
13
54
50
5
5
38
1.51
69790--69843
19
2.8
19
85
0
63
50
14
18
16
1.79
69809--69878
19
3.7
19
80
0
68
48
15
18
17
1.81
71303--71344
18
2.3
18
95
0
75
50
11
14
23
1.76
72280--72327
15
3.3
15
80
11
55
56
18
0
25
1.42
79555--79606
23
2.3
23
86
0
68
32
28
32
5
1.81
79883--79917
14
2.5
14
95
0
61
14
5
17
62
1.49
81004--81468
232
2.0
232
96
0
858
32
17
15
34
1.91
92647--92684
15
2.4
16
82
4
51
23
7
0
68
1.16
108666--108752
21
4.2
21
75
4
88
21
20
24
33
1.97
108758--108790
6
5.7
6
96
3
59
36
45
18
0
1.49
111621--111669
18
2.7
18
100
0
98
26
12
14
46
1.79
115871--116121
51
5.0
51
82
2
301
39
22
23
14
1.91
115871--116122
99
2.5
101
82
3
312
39
22
23
14
1.91
123614--123647
16
2.1
16
94
0
59
32
8
26
32
1.87
145651--145737
36
2.4
36
80
0
93
31
10
16
42
1.81
146002--146047
12
3.8
12
91
0
74
50
21
10
17
1.77

Tables:   1

The End!