Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003520.1 Hibiscus syriacus cultivar Beakdansim tig00007440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155600

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32375--32414
21
2.0
20
85
5
53
40
0
12
47
1.41
39668--39697
15
1.9
16
93
6
53
73
0
0
26
0.84
39678--39771
26
3.6
25
72
15
73
52
7
7
32
1.58
39702--39771
27
2.6
28
74
17
76
47
10
8
34
1.68
40929--40966
19
2.0
20
84
5
51
34
7
5
52
1.53
41023--41089
33
2.0
33
100
0
134
44
0
11
43
1.41
41295--41395
31
3.3
31
92
0
157
48
1
3
45
1.32
41313--41410
15
6.5
15
73
17
69
48
0
4
46
1.20
49683--49751
21
3.2
20
69
19
50
42
15
2
39
1.63
50274--50321
23
2.1
23
84
0
60
37
10
18
33
1.85
50798--50865
23
3.0
23
82
8
93
39
19
5
35
1.76
52368--52439
3
24.0
3
76
0
72
23
33
6
36
1.82
52375--52456
36
2.3
36
91
0
128
20
32
8
37
1.83
52369--52456
12
7.3
12
85
0
95
21
32
7
37
1.83
52393--52456
18
3.6
18
75
8
67
18
32
9
39
1.83
53920--54496
200
2.9
200
95
1
1034
30
17
14
36
1.90
54619--54663
19
2.4
19
100
0
90
55
8
0
35
1.31
56453--56518
33
2.0
33
90
0
105
22
48
0
28
1.51
56552--56616
21
3.1
21
93
0
103
16
30
10
41
1.83
58817--58872
20
2.8
19
76
7
58
21
14
8
55
1.66
58998--59044
20
2.3
20
89
10
78
17
19
8
55
1.67
58788--59258
181
2.6
181
87
2
642
27
17
12
42
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66801--66834
17
2.0
17
100
0
68
41
11
5
41
1.66
82660--82754
21
4.6
21
80
7
115
33
27
20
18
1.96
82639--82708
19
3.5
19
71
11
59
38
22
18
20
1.93
82635--82729
40
2.3
42
94
3
167
35
25
18
20
1.95
82742--82793
20
2.6
20
100
0
104
38
17
21
23
1.93
82657--82793
61
2.2
61
78
14
149
35
23
19
21
1.96
83666--83759
48
2.0
47
87
2
134
21
24
7
46
1.76
93051--93116
33
2.1
31
86
8
89
36
24
15
24
1.93
101361--101385
2
12.5
2
100
0
50
52
0
0
48
1.00
103025--103078
27
2.0
27
96
0
99
42
7
3
46
1.49
103174--103235
21
3.0
21
87
0
97
32
8
16
43
1.77
103216--103404
76
2.5
75
85
5
245
30
13
10
45
1.77
103322--103520
100
2.0
100
87
2
283
30
13
12
44
1.80
103762--104122
70
5.1
70
81
6
374
32
9
11
45
1.73
103762--104118
141
2.5
140
80
10
440
33
9
11
45
1.73
108798--108859
20
2.9
21
85
9
72
19
25
33
20
1.96
122443--122493
23
2.2
24
92
3
86
39
17
0
43
1.49
123304--123337
17
2.0
17
100
0
68
29
11
11
47
1.76
141673--141882
100
2.1
101
92
0
350
30
26
18
24
1.97
141850--141984
20
6.7
20
74
9
130
34
27
16
21
1.94
141827--142110
61
4.6
61
72
11
211
37
23
16
22
1.93
141914--142166
41
6.1
41
76
6
267
37
23
16
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142041--142145
20
5.2
20
71
13
97
35
26
16
21
1.94
142057--142166
21
5.3
21
70
12
84
39
23
15
21
1.92
142603--142659
19
3.0
19
94
0
96
36
28
3
31
1.74
145532--145700
83
2.0
83
100
0
338
37
16
10
35
1.83
148828--148857
5
6.0
5
92
0
51
20
36
0
43
1.52

Tables:   1

The End!