genome.fa.s3521.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003521.1 Hibiscus syriacus cultivar Beakdansim tig00007442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180572

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140--1186	11	4.2	11	84	15	60	0	17	0	82	0.66
1139--1186	6	8.3	6	78	17	57	0	16	0	83	0.65
1139--1186	18	2.8	17	80	20	64	0	16	0	83	0.65
11515--11733	10	23.4	9	64	21	69	70	2	9	18	1.25
11516--11767	15	17.9	14	64	22	52	71	1	9	17	1.22
11675--11787	12	9.2	12	70	18	65	76	1	7	14	1.09
11838--11962	3	38.7	3	75	17	83	66	0	4	28	1.12
13010--13044	15	2.2	17	90	10	56	48	2	0	48	1.16
16828--16873	2	23.0	2	100	0	92	50	0	0	50	1.00
17088--17129	16	2.6	16	96	0	75	59	23	9	7	1.53
18205--18243	14	2.8	14	84	0	51	56	23	10	10	1.63
18635--18683	2	24.5	2	95	0	89	48	0	0	51	1.00
22641--22671	16	1.9	16	93	0	53	6	25	29	38	1.81
26562--26728	2	89.0	2	69	22	96	47	3	1	47	1.27
26555--26722	19	9.2	17	68	15	61	48	4	1	45	1.29
26616--26709	49	1.9	48	78	18	97	50	3	2	44	1.30
34419--34487	8	8.8	8	72	15	54	79	2	15	1	0.92
34427--34482	14	3.8	14	81	13	60	80	3	14	1	0.93
34419--34514	16	6.1	16	75	11	67	77	3	17	2	1.00
36439--36805	90	4.2	90	84	6	509	25	17	21	35	1.95
36535--36788	81	3.0	79	79	13	301	24	18	21	35	1.96
36445--36788	171	2.0	171	90	0	544	24	18	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36850--36921	37	2.0	36	83	2	90	29	16	9	44	1.80
36962--37082	31	3.7	31	70	18	102	28	17	14	39	1.88
36935--37114	67	2.7	66	88	5	240	25	18	14	41	1.88
36935--37147	67	3.2	66	86	4	214	24	19	14	40	1.89
36935--37171	67	3.6	66	81	5	183	24	19	14	40	1.90
37528--38780	44	28.7	44	68	6	549	29	19	21	29	1.98
37528--38829	133	9.9	133	85	2	1642	29	20	21	29	1.98
37528--38788	262	4.8	258	85	3	1605	29	19	21	29	1.98
37528--38825	395	3.3	392	88	1	1870	29	20	21	29	1.98
40048--40100	21	2.6	20	74	11	54	28	5	7	58	1.48
44390--44431	21	2.0	20	86	4	57	14	26	35	23	1.93
44395--44477	21	3.9	22	74	13	66	16	24	33	25	1.96
55556--55601	18	2.6	17	93	3	74	32	6	32	28	1.83
55965--56574	250	2.4	250	82	14	752	40	20	12	26	1.88
56181--56300	62	1.9	63	84	5	163	39	32	12	15	1.85
59005--59030	2	13.0	2	100	0	52	50	0	0	50	1.00
60466--60785	155	2.0	159	96	3	594	35	10	10	44	1.73
61162--61214	23	2.3	23	83	6	72	56	0	5	37	1.23
61160--61214	22	2.4	22	80	14	67	56	0	5	38	1.23
62288--62343	14	4.3	14	76	17	66	10	12	23	53	1.69
62295--62364	24	2.9	24	87	4	97	12	10	18	58	1.62
63088--63162	10	7.7	10	67	21	52	10	12	20	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63094--63158	16	4.1	16	91	0	112	9	12	21	56	1.63
64977--65031	20	2.8	21	81	10	62	30	25	5	38	1.79
64986--65030	20	2.2	20	88	0	63	31	24	6	37	1.81
66232--66302	30	2.4	30	97	0	133	56	7	0	36	1.27
70233--70295	31	2.0	31	96	0	117	23	3	36	36	1.71
74012--74057	23	2.0	23	100	0	92	60	8	4	26	1.44
77327--77365	15	2.6	15	95	0	69	35	25	0	38	1.56
83430--83503	21	3.5	21	80	10	78	35	17	20	27	1.95
87037--87113	21	3.6	21	72	10	66	29	14	28	27	1.95
90679--90732	21	2.5	21	82	8	65	29	14	27	27	1.95
94270--94346	21	3.6	21	72	10	66	29	14	28	27	1.95
105243--105620	188	2.0	189	99	0	749	30	23	15	30	1.95
111212--111292	22	3.7	21	75	8	72	24	28	25	20	1.99
111212--111294	23	3.8	22	79	6	96	24	28	25	21	1.99
112878--112923	18	2.5	17	89	10	65	43	23	32	0	1.54
115696--115736	13	3.1	13	89	3	55	39	12	7	41	1.70
122641--122888	69	3.6	69	84	3	320	28	2	35	33	1.72
122779--122919	69	2.1	64	80	12	144	32	2	33	31	1.70
122649--122930	138	2.0	138	80	4	309	30	2	33	32	1.72
128856--129216	130	2.8	130	95	0	634	50	5	9	35	1.57
129830--129859	2	15.0	2	100	0	60	50	0	0	50	1.00
135599--135758	65	2.5	65	86	1	223	31	21	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144301--144508	65	3.2	65	88	4	280	31	22	18	28	1.97
149195--149219	13	1.9	13	100	0	50	40	0	28	32	1.57
150539--150568	2	15.0	2	100	0	60	50	0	50	0	1.00
152820--152848	4	7.2	4	100	0	58	75	0	24	0	0.80
153056--153088	5	6.4	5	93	6	57	21	36	24	18	1.95
153058--153089	11	3.0	11	95	4	57	18	37	25	18	1.94
153318--153385	32	2.1	32	97	0	127	54	10	7	27	1.61
153409--153482	7	10.7	7	76	2	78	41	36	2	18	1.65
153571--153883	156	2.0	156	98	0	608	51	13	9	25	1.71
156350--156383	12	2.8	12	90	4	50	14	17	29	38	1.90
157301--157333	16	2.1	16	94	0	57	57	21	12	9	1.62
157399--157472	10	7.6	10	72	22	68	62	20	8	9	1.51
157406--157474	16	4.3	16	88	0	102	62	20	7	10	1.50
158148--158203	14	4.3	14	78	17	66	53	23	12	10	1.69
158128--158196	24	2.9	24	86	0	102	57	18	10	13	1.63
164010--164074	28	2.3	28	82	12	80	50	1	3	44	1.26
164108--164260	30	5.1	30	74	9	141	32	7	0	59	1.31
164353--164420	20	3.3	20	74	13	66	45	5	0	48	1.26
166454--166505	27	1.9	27	88	0	77	25	42	7	25	1.81
171040--171091	27	1.9	27	88	0	77	25	42	7	25	1.81

Tables:   1

The End!