Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003522.1 Hibiscus syriacus cultivar Beakdansim tig00007443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129609

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2380--2446
11
5.9
12
80
16
81
50
1
0
47
1.10
2403--2452
22
2.4
21
77
16
59
56
0
0
44
0.99
2693--2767
34
2.1
35
87
4
107
40
14
13
32
1.85
6593--6648
28
2.0
28
82
3
67
28
5
7
58
1.46
8122--8147
11
2.4
11
100
0
52
61
0
7
30
1.24
10434--10458
11
2.3
11
100
0
50
92
0
0
8
0.40
16284--16315
7
4.6
7
92
0
55
12
3
59
25
1.48
18256--18321
27
2.4
26
82
5
69
25
24
18
31
1.97
23584--23610
2
13.5
2
100
0
54
51
0
0
48
1.00
26244--26271
3
9.3
3
100
0
56
64
0
0
35
0.94
26487--26518
17
1.9
17
93
6
57
34
0
0
65
0.93
27010--27035
2
13.0
2
100
0
52
0
50
0
50
1.00
34204--34247
22
2.0
22
81
4
52
40
9
4
45
1.56
35925--36013
19
4.3
20
77
17
101
35
5
28
30
1.80
37036--37079
20
2.2
20
87
0
61
43
4
2
50
1.35
37067--37109
13
3.3
13
80
0
50
39
0
4
55
1.20
40083--40121
6
6.8
6
88
11
64
0
0
53
46
1.00
40083--40121
11
3.4
12
89
10
64
0
0
53
46
1.00
40083--40121
17
2.3
17
100
0
78
0
0
53
46
1.00
40090--40128
17
2.3
17
90
0
60
0
2
56
41
1.13
40150--41016
291
3.0
290
94
2
1492
36
20
12
30
1.90
43624--43783
43
3.7
44
81
10
163
25
17
6
51
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45966--46019
2
27.5
2
88
3
83
46
0
0
53
1.00
47252--47298
24
2.0
24
87
4
69
53
0
0
46
1.00
47557--47589
12
2.8
12
86
4
50
12
12
45
30
1.78
47613--47705
39
2.3
40
77
15
95
45
0
0
54
0.99
51847--51871
12
2.1
12
100
0
50
48
0
0
52
1.00
51910--52031
46
2.7
45
91
6
178
40
7
8
44
1.62
51910--52031
45
2.7
46
91
6
189
40
7
8
44
1.62
56877--56990
13
9.2
13
70
17
91
44
0
0
53
1.12
56877--57008
13
10.5
12
71
16
72
43
0
1
53
1.15
56885--56955
24
2.8
25
85
8
92
47
0
1
50
1.09
56909--56990
39
2.2
36
85
10
103
43
1
1
53
1.16
56862--57011
62
2.4
63
93
4
252
42
0
2
54
1.16
57021--57080
20
3.1
20
77
15
56
38
0
1
60
1.07
57262--57333
32
2.3
30
74
9
72
62
2
0
34
1.10
61325--61469
76
1.9
76
97
0
272
31
9
18
40
1.83
63256--63290
18
1.9
18
94
0
61
20
20
34
25
1.96
64317--64396
23
3.4
23
82
5
88
47
18
10
23
1.79
64925--64971
24
2.0
24
86
0
67
63
12
4
19
1.44
65181--65221
14
2.9
14
81
0
55
60
17
7
14
1.55
68700--68779
20
3.8
20
73
12
63
18
26
28
26
1.98
77061--77987
44
21.2
43
89
5
1328
30
21
6
41
1.77
77061--77987
132
7.1
131
95
1
1470
30
21
6
41
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78161--79013
117
7.3
116
81
7
899
31
20
10
37
1.87
78179--79018
176
4.8
176
94
1
1368
31
20
10
37
1.87
79338--79430
19
4.8
19
90
5
143
26
24
19
29
1.98
80486--80541
21
2.7
21
88
0
76
42
16
14
26
1.86
83160--83190
2
15.5
2
100
0
62
51
0
0
48
1.00
83957--83991
4
8.8
4
100
0
70
74
0
25
0
0.82
84638--84686
24
2.0
24
100
0
98
18
24
28
28
1.98
85285--85594
131
2.4
131
90
1
478
32
10
18
39
1.85
86340--86711
184
2.0
183
97
0
708
29
12
32
25
1.93
87554--87583
2
15.0
2
100
0
60
50
0
0
50
1.00
88672--88708
18
2.1
18
90
10
58
59
0
0
40
0.97
93655--93696
15
2.8
15
78
7
50
42
0
0
57
0.99
108357--108396
19
2.0
21
90
9
66
55
0
2
42
1.13
108825--108852
2
14.0
2
100
0
56
50
0
0
50
1.00
110757--110782
10
2.6
10
100
0
52
11
0
7
80
0.89
119842--119922
40
2.0
40
92
0
135
43
7
23
25
1.80
120581--120621
19
2.2
19
86
0
55
43
7
12
36
1.70
126709--126756
21
2.3
21
88
0
69
27
16
10
45
1.80

Tables:   1

The End!