genome.fa.s3526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003526.1 Hibiscus syriacus cultivar Beakdansim tig00007448_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182817

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098--1426	108	3.1	105	82	6	383	38	11	12	37	1.79
2084--2297	99	2.2	100	84	7	292	32	10	13	44	1.77
3283--3336	15	3.5	15	75	9	63	24	35	24	16	1.95
3500--3621	65	1.9	65	86	3	174	27	14	27	30	1.95
4005--4035	12	2.7	11	90	9	53	35	0	0	64	0.94
12372--12433	27	2.4	26	89	7	92	37	16	17	29	1.92
15502--15562	27	2.3	27	91	0	95	32	16	19	31	1.94
15817--15850	17	1.9	18	88	5	52	29	20	5	44	1.75
21999--22048	23	2.2	23	100	0	100	30	8	18	44	1.78
25085--25136	18	2.9	18	100	0	104	11	21	50	17	1.77
25114--25146	13	2.5	13	95	0	57	12	21	48	18	1.80
25096--25157	31	2.0	31	87	0	88	14	22	45	17	1.85
25149--25203	10	5.6	10	85	10	78	34	29	21	14	1.93
25149--25204	19	2.9	19	87	10	78	33	28	21	16	1.95
32328--32366	13	3.0	13	100	0	78	15	23	46	15	1.83
32369--32424	10	5.6	10	93	6	96	35	30	21	12	1.90
32369--32424	21	2.8	20	92	7	96	35	30	21	12	1.90
35311--35384	20	3.7	20	80	3	94	40	18	22	17	1.91
35328--35403	21	3.7	21	78	3	91	42	18	23	15	1.89
35311--35403	41	2.3	41	98	0	177	40	18	23	17	1.90
35400--35486	20	4.3	20	77	2	84	34	24	18	22	1.96
35389--35466	41	1.9	41	83	0	102	41	21	15	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35674--35717	22	2.0	22	95	0	79	20	45	15	18	1.85
35981--36018	20	1.9	20	88	0	58	13	15	21	50	1.78
37329--37374	18	2.6	18	89	0	74	28	43	15	13	1.83
37784--37839	20	2.8	20	83	2	69	37	23	23	16	1.93
37823--37915	32	2.8	33	91	3	161	46	20	19	13	1.84
37839--37896	14	3.9	14	77	16	62	48	22	17	12	1.80
37930--37987	14	3.9	14	79	16	71	8	17	25	48	1.75
37925--38003	32	2.4	33	95	2	142	10	18	24	46	1.80
37944--38061	20	6.4	19	77	11	95	13	20	24	41	1.88
40049--40102	14	3.5	14	73	22	54	46	20	20	12	1.83
40030--40107	33	2.4	33	86	0	111	41	21	23	14	1.89
40128--40201	19	3.8	19	90	1	103	17	22	22	36	1.95
40148--40204	19	3.0	19	97	0	105	15	22	26	35	1.94
41261--41314	24	2.2	24	93	0	90	25	14	20	38	1.91
43805--43931	33	3.8	33	86	4	193	42	18	22	15	1.89
43810--43938	66	2.0	66	96	0	240	42	17	22	17	1.89
43931--43973	20	2.2	20	87	4	61	16	18	23	41	1.89
43959--43992	14	2.4	14	85	0	50	11	20	20	47	1.81
44114--44150	14	2.6	14	91	0	65	45	24	0	29	1.53
45455--45535	21	3.9	21	69	6	65	24	22	32	20	1.98
45479--45562	42	2.0	42	83	4	107	23	16	38	21	1.93
47296--47436	19	7.8	19	68	17	77	43	21	22	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47321--47419	33	3.0	33	84	1	135	39	24	24	12	1.89
47391--47441	19	2.7	19	96	0	93	45	21	21	11	1.84
47437--47517	19	4.5	19	74	16	73	11	17	24	46	1.80
48065--48165	20	4.9	21	71	12	59	18	19	18	42	1.89
48028--48121	20	4.7	20	80	2	89	23	18	24	34	1.96
48049--48183	41	3.3	41	82	4	139	19	21	20	38	1.94
48110--48202	20	4.6	20	77	4	87	17	23	18	40	1.90
48110--48185	21	3.7	21	80	3	100	15	25	18	40	1.90
48110--48202	41	2.3	41	98	0	177	17	23	18	40	1.90
62863--62964	34	2.9	35	92	4	170	44	12	14	28	1.82
63356--63398	18	2.5	17	85	7	61	25	4	2	67	1.22
63662--63709	24	2.0	24	84	8	62	18	2	2	77	0.97
66638--66670	2	16.5	2	100	0	66	48	0	0	51	1.00
66855--66890	2	18.0	2	94	0	63	50	2	0	47	1.15
70920--70976	21	2.8	21	76	10	55	63	3	17	15	1.45
78020--78065	23	2.0	23	100	0	92	21	13	39	26	1.90
78283--78951	105	6.4	105	93	1	1081	33	24	18	24	1.97
80721--80754	2	17.0	2	93	0	59	50	2	0	47	1.16
83517--83582	21	3.2	20	84	4	78	80	6	12	1	0.96
85061--85182	36	3.4	36	75	8	106	24	20	16	38	1.92
85198--85460	36	7.4	36	79	9	272	27	19	13	39	1.89
85240--85424	102	1.8	102	89	2	291	28	17	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85113--85523	138	3.0	138	86	0	563	28	20	12	39	1.88
85418--85592	65	2.6	65	85	4	224	33	21	8	36	1.83
86196--86960	105	7.3	105	89	3	1069	33	26	17	22	1.96
87495--87595	37	2.9	35	91	5	161	43	12	14	28	1.83
87987--88029	18	2.5	17	85	7	61	25	4	2	67	1.22
88027--88126	2	51.5	2	74	16	68	40	3	1	56	1.22
92083--92118	2	18.0	2	100	0	72	50	0	0	50	1.00
103800--103828	14	2.1	14	100	0	58	31	27	6	34	1.83
104245--104513	90	3.0	90	91	1	407	25	19	28	26	1.99
107008--107480	234	2.0	234	99	0	937	26	14	22	36	1.93
121620--121644	13	1.9	13	100	0	50	72	12	0	16	1.13
125658--125695	3	12.7	3	100	0	76	31	0	0	68	0.90
135476--135543	36	1.9	36	90	3	111	45	0	4	50	1.22
139796--139834	19	2.1	18	85	4	51	79	7	0	12	0.93
140851--140902	23	2.1	24	82	10	61	51	3	1	42	1.31
141068--141118	19	2.6	19	87	3	66	35	33	11	19	1.88
141148--141219	20	3.5	20	82	1	81	45	15	16	22	1.84
141398--141435	20	1.9	20	88	0	58	23	18	13	44	1.85
141330--141542	104	2.0	104	86	1	293	29	15	18	37	1.91
141434--141794	186	1.9	187	89	0	553	28	18	18	34	1.95
141689--141741	20	2.6	20	81	3	61	20	16	18	43	1.88
141983--142044	20	3.1	20	86	4	81	25	16	16	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149122--149172	20	2.5	20	100	0	102	33	19	25	21	1.97
150215--150247	5	6.6	5	100	0	66	39	0	21	39	1.53
170651--170690	20	2.0	20	85	0	53	52	15	15	17	1.75
174395--174451	29	2.0	29	89	0	87	15	31	29	22	1.95
174552--174636	33	2.6	33	88	3	118	8	40	25	25	1.83
174637--174690	20	2.7	20	88	0	81	11	25	37	25	1.89
174677--174704	14	2.0	14	100	0	56	7	28	42	21	1.79
177294--177335	18	2.3	19	80	12	52	26	4	0	69	1.08
177692--177730	19	2.0	19	85	5	51	41	2	0	56	1.13

Tables:   1

The End!