genome.fa.s3527.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003527.1 Hibiscus syriacus cultivar Beakdansim tig00007449_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100568

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4917--4950	14	2.3	15	90	5	52	32	11	14	41	1.82
6507--7337	120	7.0	120	82	4	946	35	17	24	22	1.95
6507--7323	354	2.3	356	83	2	1003	35	17	24	22	1.95
12404--12433	2	15.0	2	100	0	60	50	0	0	50	1.00
14428--14485	29	2.0	29	100	0	116	58	17	10	13	1.62
21497--21528	15	2.0	17	88	11	50	50	6	12	31	1.65
21858--21907	26	2.0	26	92	4	84	52	6	10	32	1.59
21928--21971	17	2.6	18	85	7	56	65	0	4	29	1.12
22749--22810	32	1.9	32	83	0	79	25	11	33	29	1.91
26397--26445	25	1.9	26	83	4	64	59	2	2	36	1.21
26409--26445	17	2.2	18	80	14	51	59	2	0	37	1.12
31322--31779	229	2.0	227	93	0	790	45	8	6	39	1.61
31845--31891	20	2.4	19	89	10	76	55	10	17	17	1.69
32011--32056	20	2.3	19	78	10	56	54	8	17	19	1.68
34359--34424	33	2.0	33	87	0	96	28	1	45	24	1.62
36214--36257	19	2.4	19	92	3	72	31	2	9	56	1.43
36351--37950	198	8.1	199	97	1	2957	37	14	15	32	1.88
39411--39478	21	3.4	18	69	21	55	36	8	35	19	1.83
39411--39508	6	16.3	6	80	0	70	36	7	34	21	1.81
39426--39512	3	29.0	3	77	0	84	35	5	34	24	1.79
39414--39504	42	2.2	42	91	0	146	35	7	35	21	1.83
39411--39508	18	5.4	18	78	0	88	36	7	34	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40877--42097	184	6.7	184	98	0	2340	35	15	15	34	1.89
40877--42097	367	3.3	367	98	0	2345	35	15	15	34	1.89
44654--44716	23	2.7	23	90	0	90	36	6	19	38	1.77
44654--44726	23	3.2	23	86	3	85	35	5	19	39	1.75
45085--45147	23	2.7	23	90	0	90	36	6	19	38	1.77
45085--45157	23	3.2	23	86	3	85	35	5	19	39	1.75
44555--45576	431	2.4	431	99	0	2021	40	8	13	38	1.74
45514--45578	23	2.8	23	90	0	94	35	7	18	38	1.80
45782--45818	18	2.1	18	89	0	56	32	5	10	51	1.60
45774--45820	24	2.0	24	86	0	67	34	4	14	46	1.64
59801--59849	22	2.2	22	82	10	55	48	2	0	48	1.12
64270--64390	64	1.9	64	83	8	156	31	30	21	16	1.95
64441--64511	16	4.4	16	94	0	115	19	28	12	39	1.88
67153--67201	3	16.7	3	82	4	64	63	0	4	32	1.13
67860--68038	66	2.8	63	75	8	171	37	15	21	25	1.93
68013--68143	35	3.7	35	95	2	237	32	9	22	35	1.87
68428--68476	19	2.9	16	77	19	55	36	6	26	30	1.81
68879--69031	67	2.3	67	85	3	193	45	11	13	30	1.79
69127--69261	29	4.8	28	90	7	195	45	15	10	28	1.79
69127--69264	56	2.4	56	87	9	201	47	15	10	27	1.77
69505--69607	36	2.9	36	82	4	122	35	11	20	32	1.89
69503--69623	36	3.4	36	78	7	115	36	13	20	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69575--69807	105	2.2	104	83	6	278	36	12	19	30	1.89
70267--70332	4	17.0	4	90	6	109	22	0	27	50	1.50
77310--77358	3	16.7	3	82	4	64	63	0	4	32	1.13
77522--77552	14	2.2	14	94	0	53	16	0	29	54	1.42
77515--77592	41	1.9	40	84	7	104	28	0	23	48	1.51
77665--77698	9	3.9	9	84	7	52	38	0	5	55	1.24
77667--77705	17	2.2	18	95	4	71	41	2	5	51	1.38
77727--77753	13	2.1	13	100	0	54	55	0	0	44	0.99
77727--77769	13	3.1	14	86	6	52	55	0	2	41	1.12
78061--78131	14	5.1	14	77	3	54	22	1	28	47	1.59
78055--78131	41	1.9	40	84	7	102	24	1	25	48	1.59
78206--78242	15	2.4	15	95	4	65	40	2	5	51	1.39
77444--79140	534	3.1	547	94	2	2922	36	8	12	42	1.74
78613--78659	14	3.4	14	76	5	51	25	0	27	46	1.53
78740--78776	15	2.4	15	95	4	65	40	2	5	51	1.39
81907--82027	61	2.0	60	95	1	215	34	25	15	23	1.95
84009--84101	32	3.0	31	82	3	114	39	2	5	52	1.36
87792--87831	19	2.1	19	95	0	71	40	17	15	27	1.89
88308--88344	10	3.6	11	79	20	53	27	0	0	72	0.84
88309--88362	17	3.1	17	76	12	56	22	3	1	72	1.10
90314--90382	33	2.1	33	94	2	122	53	18	2	24	1.58
91807--91839	2	17.0	2	90	6	50	45	0	54	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91804--91839	17	2.1	17	94	0	63	44	0	55	0	0.99
95617--95647	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1

The End!