genome.fa.s3528.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003528.1 Hibiscus syriacus cultivar Beakdansim tig00007450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83097

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1393--1481	30	3.0	30	96	0	169	23	19	22	34	1.96
1908--1949	22	2.0	22	86	9	61	38	2	7	52	1.42
5543--5578	18	2.0	18	100	0	72	33	5	33	27	1.80
9168--9200	16	2.1	16	94	0	57	57	21	12	9	1.62
9270--9329	16	3.8	16	90	0	102	56	21	11	10	1.64
9694--9787	14	7.3	14	76	18	96	56	26	9	7	1.58
9674--9748	24	3.1	24	86	0	105	58	24	8	9	1.56
9693--9787	38	2.5	38	96	0	172	56	26	9	7	1.57
9681--9786	24	4.4	24	81	3	99	57	25	8	8	1.57
9681--9710	10	3.0	10	95	0	51	56	23	10	10	1.62
12625--12747	31	4.0	31	78	7	117	50	8	17	24	1.72
12689--12747	30	2.0	30	86	0	82	49	5	20	25	1.69
21677--21801	62	2.0	62	92	3	207	25	9	28	36	1.88
37247--37288	13	3.3	13	76	6	50	33	2	9	54	1.46
42680--42852	20	8.6	20	86	6	224	35	28	18	17	1.93
42620--42852	60	3.9	59	81	9	215	36	28	18	16	1.92
43221--43291	33	2.2	33	94	0	124	11	22	16	49	1.78
43371--43447	21	3.7	21	81	6	102	48	18	22	11	1.80
43432--43488	14	3.7	14	72	20	51	45	22	22	8	1.80
43424--43493	33	2.1	33	97	0	131	48	20	22	8	1.76
43430--43504	33	2.3	33	92	0	123	48	24	20	8	1.76
43500--43559	19	3.1	19	80	4	75	13	23	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45485--45599	19	6.3	19	82	10	141	46	28	16	8	1.77
45595--45753	19	8.6	19	82	7	175	10	19	23	45	1.81
45600--45737	52	2.5	54	88	5	190	9	19	23	47	1.78
47681--47716	14	2.6	14	95	0	63	33	0	22	44	1.53
47823--47920	19	5.4	19	82	15	127	44	17	23	14	1.85
47823--47939	52	2.2	53	95	4	211	43	17	24	13	1.86
47935--48152	53	4.1	52	88	10	311	13	22	17	45	1.84
47929--48138	72	2.9	71	86	8	264	14	22	17	45	1.85
48006--48152	33	4.2	33	81	13	188	13	21	18	46	1.83
50424--50448	12	2.1	12	100	0	50	0	28	0	72	0.86
50623--50668	24	2.0	23	87	12	67	36	21	15	26	1.93
51359--51587	20	11.4	20	84	3	237	18	17	26	37	1.92
59947--60311	182	2.0	181	90	4	583	41	3	9	45	1.53
64225--64280	2	28.0	2	100	0	112	50	0	50	0	1.00
66816--66851	17	2.2	16	90	5	54	44	16	0	38	1.48
75855--75897	20	2.1	21	86	4	61	41	2	0	55	1.12
78390--78427	2	19.5	2	94	5	69	50	0	0	50	1.00
78393--78426	17	2.0	17	100	0	68	47	0	0	52	1.00
78482--78513	2	16.0	2	100	0	64	50	0	0	50	1.00
78596--78649	28	2.0	27	82	13	67	50	3	3	42	1.38

Tables:   1

The End!