Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000353.1 Hibiscus syriacus cultivar Beakdansim tig00000647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86557

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13865--13971
29
3.7
29
77
7
85
47
19
15
16
1.82
15523--15568
21
2.2
21
92
7
76
36
0
0
63
0.95
23729--23767
21
1.9
20
89
5
60
43
2
25
28
1.68
24640--24780
36
3.9
36
96
0
246
26
15
14
43
1.86
25046--25106
28
2.2
28
84
0
77
39
8
21
31
1.82
26459--26543
9
9.0
9
75
10
71
15
24
29
30
1.95
26464--26541
19
4.1
19
77
14
79
16
24
29
29
1.97
26551--26593
22
2.0
22
90
0
68
18
44
25
11
1.84
29077--29144
31
2.2
31
84
2
84
60
4
10
25
1.48
29118--29194
39
2.0
39
92
2
129
62
5
6
25
1.41
29128--29193
18
3.5
18
69
25
55
63
4
7
24
1.40
29261--31603
341
7.0
339
90
4
3408
43
7
4
44
1.53
29261--31603
679
3.5
672
90
4
3471
43
7
4
44
1.53
36430--36479
24
2.2
22
82
7
55
22
12
14
52
1.74
36455--36502
21
2.4
21
79
6
55
25
16
8
50
1.73
37573--37615
21
2.0
21
86
0
59
30
27
25
16
1.97
37595--37746
67
2.2
68
89
3
227
27
27
26
17
1.98
38052--38123
29
2.5
29
93
0
117
38
9
12
38
1.76
38418--38485
22
3.0
22
97
2
127
20
26
26
26
1.99
44522--44564
21
2.0
21
86
0
59
30
27
25
16
1.97
44544--44694
67
2.3
67
89
2
223
27
27
26
18
1.98
44658--44695
20
1.9
20
88
0
58
23
34
31
10
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44998--45069
29
2.5
29
93
0
117
38
9
12
38
1.76
45363--45428
22
3.0
22
97
2
123
18
25
28
27
1.98
48567--48612
20
2.3
20
80
0
56
30
6
4
58
1.43
49073--49105
15
2.1
16
88
5
50
54
0
9
36
1.32
79763--79825
27
2.3
28
94
2
110
20
17
22
39
1.92
82136--82218
32
2.6
32
82
0
103
48
6
8
37
1.58
84189--84230
22
2.0
22
90
4
68
66
0
2
30
1.04
84190--84234
21
2.2
22
80
11
60
68
0
2
28
1.01
84386--84421
16
2.2
16
100
0
72
61
0
8
30
1.26
84479--84548
19
3.7
19
83
9
90
22
30
27
20
1.98
84486--84547
9
6.6
10
72
20
53
22
30
27
19
1.98
84495--84546
9
5.7
9
80
10
61
25
32
26
15
1.95
85248--85729
4
123.2
4
95
4
887
25
0
24
49
1.50

Tables:   1

The End!