genome.fa.s3530.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003530.1 Hibiscus syriacus cultivar Beakdansim tig00007452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121658

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2164--2216	23	2.2	24	86	3	72	28	18	16	35	1.93
2249--2288	20	2.0	20	90	0	62	45	20	15	20	1.86
11319--11360	21	2.0	21	86	9	59	42	11	9	35	1.74
13172--13240	18	3.8	18	88	0	102	18	20	34	26	1.96
18317--18370	18	3.1	17	86	5	72	18	18	33	29	1.95
36600--36636	20	1.9	19	89	10	58	45	10	24	18	1.81
36791--36826	15	2.3	16	90	4	56	44	2	0	52	1.15
46341--46518	42	4.3	40	80	5	171	22	17	22	37	1.94
46366--46517	42	3.7	41	86	5	211	22	17	22	38	1.93
46440--46572	61	2.2	61	87	0	194	24	18	21	35	1.96
46347--46566	103	2.1	102	82	6	257	23	18	22	35	1.95
46347--46572	21	11.1	19	70	11	101	23	18	22	35	1.95
49219--49259	18	2.3	18	100	0	82	26	9	36	26	1.88
53239--53266	8	3.5	8	100	0	56	35	0	0	64	0.94
55239--55302	30	2.1	31	88	8	96	25	21	3	50	1.64
60141--60170	15	2.0	15	93	0	51	26	3	0	70	1.03
60290--60330	21	1.9	22	85	5	57	34	2	9	53	1.47
60431--60691	142	1.9	140	82	8	334	39	9	11	39	1.75
68479--68516	16	2.4	16	100	0	76	21	18	18	42	1.90
73867--73904	20	1.9	20	88	0	58	21	26	10	42	1.85
89643--89681	9	4.3	9	90	0	51	71	0	0	28	0.86
89648--89680	3	11.0	3	93	0	57	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95005--95285	55	5.1	54	84	4	282	30	24	16	28	1.97
95015--95387	110	3.5	108	82	5	386	28	24	16	30	1.96
95085--95397	55	5.9	51	84	7	329	28	26	15	29	1.96
95123--95400	102	2.6	103	85	5	353	29	26	14	29	1.95
96727--96759	7	4.7	7	92	0	57	9	12	0	78	0.95
96726--96760	14	2.4	15	95	4	63	8	11	0	80	0.92
96727--96784	20	2.8	20	86	2	71	6	18	0	74	1.04
96725--96821	14	5.9	17	71	22	57	7	18	1	73	1.12
96783--96829	18	2.6	17	83	16	51	6	19	2	72	1.17
96783--96821	16	2.2	18	86	13	55	7	17	2	71	1.21
96717--96833	41	2.9	40	72	19	100	7	18	0	72	1.13
111671--111778	35	3.2	35	81	7	125	37	22	2	37	1.69
111684--111778	31	2.9	31	84	6	109	40	23	2	34	1.66
111739--111813	35	2.1	36	82	7	91	45	18	0	36	1.50

Tables:   1

The End!