genome.fa.s3531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003531.1 Hibiscus syriacus cultivar Beakdansim tig00007454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90993

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1969--2279	131	2.4	130	82	5	342	41	16	10	31	1.83
3815--3847	2	16.5	2	100	0	66	48	0	0	51	1.00
5321--5381	22	2.8	22	90	5	88	40	19	24	14	1.89
5959--6014	24	2.3	24	84	0	76	21	21	26	30	1.98
5912--6011	24	4.3	24	72	6	71	19	23	25	33	1.97
8485--8521	17	2.1	18	90	5	58	72	0	5	21	1.04
10305--10345	2	20.5	2	100	0	82	48	0	0	51	1.00
10774--10843	36	1.9	36	100	0	140	41	0	8	50	1.33
18952--18982	13	2.5	13	94	5	55	16	35	22	25	1.94
21444--21551	24	4.5	25	79	8	107	20	12	17	49	1.79
21489--21546	12	4.9	11	76	14	53	17	12	18	51	1.75
21444--21552	48	2.3	48	83	3	130	20	12	17	49	1.79
21510--21550	12	3.4	12	79	0	55	17	12	17	53	1.72
25786--25857	24	3.0	24	70	0	63	22	5	16	55	1.62
27211--27265	22	2.5	22	75	0	56	29	9	23	38	1.85
31207--31241	2	17.5	2	100	0	70	51	0	0	48	1.00
32852--32913	22	2.7	23	78	12	65	58	6	0	35	1.24
32876--32910	11	3.2	11	83	0	52	65	0	0	34	0.93
32875--32922	22	2.2	22	92	0	78	62	0	2	35	1.07
34356--34386	15	2.1	14	94	5	53	29	0	0	70	0.87
34346--34386	15	2.6	17	77	18	52	26	0	2	70	0.99
35088--35116	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36273--36317	18	2.4	18	88	3	63	28	2	4	64	1.25
36322--36392	35	2.0	35	97	0	133	46	14	18	21	1.83
36463--36530	35	1.9	35	90	0	109	20	19	13	47	1.82
36535--36579	18	2.4	19	88	3	65	64	4	2	28	1.25
38928--38965	20	1.9	20	88	0	58	60	0	2	36	1.11
40064--40133	22	3.2	21	84	8	79	38	1	4	55	1.28
41876--41931	20	2.8	20	84	10	78	17	17	28	35	1.93
41934--41982	5	9.6	5	78	12	55	20	51	22	6	1.69
41943--41990	22	2.2	22	92	0	78	18	45	22	12	1.83
49179--49239	10	6.3	9	75	14	50	16	26	27	29	1.97
53681--53768	10	9.1	10	74	12	85	19	23	29	27	1.98
53681--53770	19	4.7	20	89	6	123	18	25	28	26	1.98
53764--53804	17	2.4	17	95	0	73	17	41	24	17	1.89
60984--61034	9	5.4	9	77	9	57	15	27	29	27	1.96
60983--61052	19	3.7	19	88	3	97	18	27	28	25	1.98
61046--61103	17	3.4	17	95	0	98	18	41	22	17	1.90
61093--61123	7	4.4	7	100	0	62	16	29	29	25	1.96
66756--66780	2	12.5	2	100	0	50	52	48	0	0	1.00
76068--76140	24	3.0	24	81	0	83	53	16	9	20	1.70
80808--80862	24	2.3	24	83	0	74	54	16	12	16	1.71
83348--83389	17	2.4	18	80	11	52	33	28	23	14	1.94
85537--85608	24	3.0	24	87	0	108	51	18	12	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85549--85608	12	5.0	12	72	8	59	50	18	15	16	1.79

Tables:   1

The End!