genome.fa.s3532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003532.1 Hibiscus syriacus cultivar Beakdansim tig00007455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135006

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10064--10201	62	2.2	64	84	2	172	36	19	16	27	1.93
10850--10901	23	2.3	23	83	3	70	19	19	28	32	1.96
12029--12074	21	2.2	21	100	0	92	34	8	23	32	1.86
12832--12930	2	49.5	2	100	0	198	50	49	0	0	1.00
13253--13378	31	4.1	30	75	13	121	32	19	18	29	1.96
16995--17027	2	16.5	2	100	0	66	51	48	0	0	1.00
17361--17484	31	3.9	32	77	11	123	32	19	16	31	1.94
19449--19506	28	2.1	28	93	6	102	27	29	17	25	1.97
22978--23022	19	2.4	19	100	0	90	31	17	26	24	1.97
31966--32018	23	2.4	22	84	9	63	30	3	3	62	1.30
32030--32076	18	2.5	19	86	6	60	34	10	2	53	1.48
33946--33976	16	2.0	15	93	6	53	70	0	3	25	1.02
34995--35068	33	2.2	33	85	0	94	17	13	45	22	1.83
36697--36896	104	1.9	104	80	8	228	30	20	20	28	1.98
37851--37903	27	2.0	27	85	3	72	47	9	3	39	1.54
37893--37926	18	1.9	18	88	5	52	50	11	0	38	1.39
37925--37974	24	2.1	24	96	0	91	50	12	8	30	1.68
38053--38093	2	20.5	2	100	0	82	48	0	0	51	1.00
38791--38850	24	2.5	24	81	8	68	33	1	3	61	1.22
44450--44482	2	16.5	2	100	0	66	51	0	48	0	1.00
48252--48293	19	2.2	19	95	0	75	57	0	0	42	0.99
48242--48301	19	2.7	24	70	26	67	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48563--48650	39	2.3	39	82	2	106	50	0	0	50	1.00
50560--50636	35	2.2	35	86	6	111	41	14	0	44	1.45
50632--50706	35	2.1	35	90	0	114	32	0	22	45	1.53
56097--56131	11	3.2	11	91	0	61	34	17	22	25	1.96
56123--56170	22	2.2	22	96	0	87	25	22	27	25	2.00
57773--57841	23	3.0	23	72	2	68	24	15	21	37	1.93
61961--62045	23	3.7	23	95	0	143	20	21	24	34	1.97
62234--62284	19	2.7	20	90	6	79	31	3	31	33	1.76
64217--64245	2	14.5	2	100	0	58	51	0	0	48	1.00
65241--65300	2	30.0	2	100	0	120	50	0	0	50	1.00
65641--65665	2	12.5	2	100	0	50	52	0	0	48	1.00
66018--66525	199	2.5	200	79	6	492	34	10	20	33	1.87
67041--67142	42	2.4	42	79	14	118	35	17	16	30	1.92
67055--67137	42	2.0	42	88	7	123	37	16	18	27	1.92
69946--70404	41	11.2	41	78	5	363	33	19	17	29	1.95
69981--70363	125	3.1	122	76	8	348	34	19	18	28	1.95
79372--79406	18	1.9	18	100	0	70	45	17	8	28	1.77
80572--80638	23	2.9	23	86	0	89	31	23	22	22	1.98
87483--87526	23	1.9	23	85	0	61	29	25	25	20	1.99
93339--93394	23	2.4	23	90	0	94	32	23	23	21	1.98
99892--99950	23	2.6	23	88	0	91	25	25	28	20	1.99
100577--100656	24	3.3	24	96	0	151	22	28	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103731--103990	143	1.8	139	85	3	358	21	10	16	51	1.74
108291--108381	44	2.1	44	97	0	173	30	15	17	36	1.91
112382--112477	25	3.8	25	81	0	111	33	2	17	46	1.60
112505--112544	18	2.2	18	90	0	62	22	2	20	55	1.56
114100--114126	14	1.9	14	100	0	54	29	0	11	59	1.32
115273--115336	28	2.3	28	97	0	119	48	14	21	15	1.80
125021--125077	6	9.0	6	75	17	53	47	3	29	19	1.66
133154--133242	38	2.4	37	88	3	142	38	38	10	13	1.78
133457--133536	31	2.6	31	97	0	151	35	43	11	10	1.74
133066--133598	257	2.1	252	83	9	650	36	28	11	24	1.89

Tables:   1

The End!