genome.fa.s3533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003533.1 Hibiscus syriacus cultivar Beakdansim tig00007456_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117465

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416--457	22	1.9	22	90	0	66	47	0	0	52	1.00
411--457	8	6.0	8	78	12	53	46	0	0	53	1.00
466--517	27	1.9	27	88	0	77	48	0	0	51	1.00
503--542	18	2.2	18	86	0	53	52	0	0	47	1.00
551--613	26	2.5	26	85	12	78	49	0	0	50	1.00
918--984	14	4.3	14	73	23	53	52	1	1	44	1.19
7367--7469	50	2.1	50	98	0	197	36	17	18	27	1.93
23788--23908	55	2.2	54	82	4	145	19	20	22	37	1.95
23807--24022	57	3.8	57	81	4	179	26	19	18	36	1.94
23898--23991	29	3.3	28	69	8	73	30	19	18	31	1.95
27831--27871	2	20.5	2	100	0	82	51	0	0	48	1.00
28051--28372	160	2.0	160	100	0	644	39	12	15	32	1.85
30215--30267	22	2.5	20	80	14	61	50	1	3	43	1.30
30674--30724	21	2.3	21	90	6	75	39	0	0	60	0.97
30674--30726	22	2.4	24	84	15	78	39	0	0	60	0.97
38693--38845	77	2.0	77	92	0	252	47	23	7	21	1.75
39327--39386	22	2.7	23	80	7	72	65	6	21	6	1.40
54083--54117	17	2.0	18	88	5	54	31	5	2	60	1.35
56369--56419	26	2.0	26	84	7	68	17	1	17	62	1.42
57778--57832	22	2.6	23	88	11	82	40	20	14	25	1.90
57864--57909	20	2.3	20	92	0	74	34	13	21	30	1.91
58875--58932	18	3.3	18	63	18	50	15	10	18	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58859--58941	34	2.4	34	91	0	130	15	10	20	53	1.72
62121--62228	36	3.0	36	90	0	162	32	13	15	37	1.87
67911--68037	23	5.9	22	79	14	124	29	16	27	26	1.97
67914--68037	44	2.8	43	83	12	155	29	16	26	27	1.97
70751--70977	7	32.9	7	68	16	73	46	29	3	20	1.66
71739--71817	3	26.3	3	100	0	158	32	0	0	67	0.91
72964--73019	17	3.3	17	87	0	85	28	14	25	32	1.94
73004--73113	11	9.6	11	72	7	85	30	22	20	26	1.99
72998--73139	23	6.1	23	89	0	194	28	23	21	26	1.99
77584--77638	21	2.6	21	97	0	101	16	23	36	23	1.94
80691--80853	80	2.0	81	97	1	310	37	14	16	31	1.89
81002--81167	84	2.0	86	86	7	241	42	7	10	38	1.69
88770--88801	15	2.1	15	94	0	55	15	6	43	34	1.72
89319--89426	36	3.0	36	91	0	180	30	15	15	37	1.89
91935--91980	18	2.6	18	85	0	65	36	10	23	28	1.89
92609--92707	18	5.5	18	91	2	155	37	14	29	19	1.91
91935--94041	730	2.9	729	90	2	3233	36	11	16	36	1.85
93342--93437	18	5.3	18	97	0	174	30	16	35	17	1.93
98290--98343	26	2.0	28	86	13	78	42	0	3	53	1.18
101962--102076	56	2.0	57	94	1	205	32	13	20	33	1.92
107924--107991	21	3.2	21	64	15	59	20	20	23	35	1.96
108024--108072	18	2.7	18	87	6	64	26	14	30	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109244--109304	22	2.9	21	95	4	97	49	4	0	45	1.23
111703--111736	16	2.1	16	89	10	52	55	0	2	41	1.15
111710--111778	18	3.8	18	76	14	54	47	5	2	43	1.42
111720--111780	18	3.3	18	75	13	61	47	6	3	42	1.45
111768--111847	13	5.8	13	72	8	61	45	7	7	40	1.61
111728--111847	13	8.0	15	68	14	54	45	7	5	41	1.54
111855--111933	14	5.8	14	66	26	53	46	1	3	48	1.28
111829--111946	54	2.2	54	94	5	206	48	1	5	44	1.34
111985--112027	2	22.0	2	85	4	61	44	0	0	55	0.99
112120--112157	7	5.4	7	87	0	58	42	42	0	15	1.47
112111--112156	21	2.2	21	92	0	74	41	36	0	21	1.54
112475--112513	20	2.0	19	90	5	60	48	5	5	41	1.47
112449--112565	57	2.0	59	85	6	159	41	5	7	44	1.57
112608--112720	21	5.5	21	77	16	121	40	7	7	45	1.59
112572--112737	61	2.7	62	89	4	255	40	6	8	45	1.59
112758--112865	34	3.0	34	74	17	92	44	5	3	46	1.44
112730--112970	62	3.8	61	73	17	161	42	5	3	48	1.44
112938--112998	6	9.8	6	73	19	54	45	1	0	52	1.10
112977--113022	18	2.6	17	83	10	56	47	0	2	50	1.13
112938--113026	24	3.6	24	82	8	92	47	1	1	50	1.15
113679--113754	13	5.9	14	69	18	67	48	15	9	26	1.75
113675--113752	25	3.1	25	94	0	129	48	15	10	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114289--114329	11	3.7	11	84	12	57	41	7	4	46	1.53
114565--114616	23	2.3	23	93	3	88	46	9	1	42	1.47
114894--114926	16	2.1	16	94	0	57	39	15	24	21	1.91

Tables:   1

The End!