Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003534.1 Hibiscus syriacus cultivar Beakdansim tig00007459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87251

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1931--1994
33
1.9
33
83
0
83
51
9
12
26
1.70
3593--3626
17
2.0
17
100
0
68
23
35
5
35
1.79
8889--8928
18
2.3
18
82
4
55
75
17
7
0
1.03
10374--10458
29
3.0
28
81
8
82
38
12
23
24
1.90
21936--22085
77
1.9
77
93
0
255
49
13
10
26
1.74
29257--29283
14
1.9
14
100
0
54
66
14
18
0
1.25
43535--43595
23
2.7
23
81
0
77
18
22
22
36
1.95
44729--44778
24
2.1
24
85
7
66
24
2
14
60
1.45
45665--45730
2
33.0
2
100
0
132
50
0
0
50
1.00
45730--45754
2
12.5
2
100
0
50
0
0
48
52
1.00
46323--47052
331
2.2
328
86
4
1008
38
11
9
40
1.74
47905--47976
3
23.0
3
84
5
81
40
1
0
58
1.07
47905--47974
27
2.4
29
90
6
108
40
1
0
58
1.07
47905--47976
15
4.6
15
84
8
90
40
1
0
58
1.07
47909--47994
24
3.5
23
71
9
55
47
1
0
51
1.08
48422--48456
18
1.9
18
88
0
52
74
8
14
2
1.17
49306--49335
9
3.3
9
95
0
51
13
0
10
76
1.01
60786--60837
6
9.2
6
80
16
58
84
0
15
0
0.62
60789--60838
10
4.6
10
83
16
64
86
0
14
0
0.58
60783--60839
29
2.0
30
89
6
91
82
0
17
0
0.67
60786--60837
23
2.3
23
90
3
88
84
0
15
0
0.62
61972--62415
83
5.2
83
88
5
577
28
13
21
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62204--62415
90
2.3
91
85
4
277
31
14
21
33
1.93
62433--62613
93
1.9
93
85
4
249
34
13
16
35
1.88
63400--63950
114
4.8
114
92
0
879
38
13
18
28
1.89
64174--64241
3
22.0
3
86
3
73
41
1
0
57
1.08
64176--64239
12
4.9
12
83
16
83
42
1
0
56
1.09
64208--64256
20
2.5
20
79
0
53
51
0
0
48
1.00
65547--65593
20
2.3
21
75
10
53
25
4
8
61
1.43
66554--66603
14
3.9
14
72
20
54
16
12
14
58
1.64
66539--66603
24
2.7
24
86
9
96
15
13
15
55
1.70
67053--67101
16
3.1
16
82
11
64
12
12
20
55
1.68
70169--70200
15
2.1
15
94
0
55
59
9
6
25
1.52
72615--72649
18
1.9
18
88
0
52
28
31
17
22
1.96
73218--73380
64
2.6
65
82
6
165
25
19
21
33
1.97
73259--73380
64
1.9
64
86
3
174
24
18
21
36
1.95
76955--77000
2
23.5
2
91
4
76
54
0
0
45
0.99
77158--77213
28
2.0
28
100
0
112
50
10
17
21
1.77
78503--78932
165
2.6
165
85
2
562
30
23
16
29
1.96
78503--78932
55
7.8
55
85
5
462
30
23
16
29
1.96
80319--80424
14
7.4
14
68
22
69
10
16
0
72
1.16
80319--80425
28
3.8
29
74
19
91
10
16
0
71
1.17
80302--80433
44
3.1
44
75
19
111
11
15
0
71
1.17
80386--80443
27
2.1
27
84
6
73
8
18
0
72
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80356--80449
28
3.3
28
73
11
75
11
17
0
71
1.15

Tables:   1

The End!