Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003536.1 Hibiscus syriacus cultivar Beakdansim tig00007462_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136306

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1003--1058
26
2.1
28
90
6
89
41
19
14
25
1.89
2325--2350
13
2.0
13
100
0
52
46
0
0
53
1.00
16712--16774
14
4.5
14
91
0
99
25
26
20
26
1.99
16783--16812
13
2.2
14
94
5
53
16
20
20
43
1.88
26559--26598
21
1.9
21
89
0
62
25
20
22
32
1.98
28143--28188
20
2.3
19
85
14
58
50
8
15
26
1.73
32944--32968
6
4.2
6
100
0
50
16
0
0
84
0.63
38424--38462
20
2.1
19
85
9
53
30
25
20
23
1.98
38887--38948
25
2.4
25
81
7
72
37
12
8
41
1.73
38991--39050
31
2.0
30
83
9
77
36
3
23
36
1.71
39290--39334
23
2.0
23
90
0
72
17
24
26
31
1.97
58413--58457
22
2.0
23
82
4
56
20
22
26
31
1.98
59053--59157
44
2.4
45
83
4
124
30
22
21
24
1.99
61386--61435
20
2.5
21
78
12
52
28
22
14
36
1.92
62207--62259
26
2.0
26
100
0
106
18
30
3
47
1.67
63041--63254
107
2.0
107
100
0
428
35
16
10
37
1.83
69283--69325
19
2.2
20
88
12
63
53
0
13
32
1.41
69283--69330
17
2.8
16
84
12
51
50
0
12
37
1.41
71758--71809
22
2.4
22
90
6
79
9
21
44
25
1.82
71756--71799
22
2.0
22
100
0
88
9
22
45
22
1.80
78007--78051
18
2.8
16
80
12
56
68
2
0
28
1.01
83537--83589
22
2.6
20
77
19
56
50
0
3
45
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83537--83585
20
2.3
21
82
6
55
48
0
2
48
1.12
83964--84027
23
2.7
23
81
11
69
65
3
0
31
1.08
83982--84033
22
2.4
21
83
6
59
69
3
0
26
1.06
85387--85462
3
24.7
3
81
5
89
60
1
0
38
1.05
85697--86548
113
7.5
113
89
3
1180
29
18
14
38
1.90
86949--87025
22
3.5
22
87
0
109
40
12
14
32
1.84
89628--89813
93
2.0
92
95
1
336
34
21
15
27
1.94
92041--92068
2
14.0
2
100
0
56
50
0
0
50
1.00
97016--97048
18
1.9
17
88
11
50
48
0
0
51
1.00
96996--97045
19
2.6
18
81
12
55
54
0
2
44
1.11
97416--97470
22
2.5
21
77
16
58
65
1
0
32
1.03
98837--98912
3
24.7
3
81
5
80
59
2
0
38
1.12
98839--98912
22
3.4
22
84
1
87
58
2
0
39
1.13
99175--99211
18
2.1
18
100
0
74
27
40
21
10
1.86
114642--114679
17
2.2
17
95
0
67
52
7
21
18
1.70
119191--119250
31
1.9
31
89
0
93
33
0
8
58
1.28

Tables:   1

The End!