Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003537.1 Hibiscus syriacus cultivar Beakdansim tig00007463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60516

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5758--5784
11
2.5
11
100
0
54
85
0
0
14
0.61
8725--8759
15
2.3
15
90
0
52
48
5
8
37
1.58
9559--9607
2
24.5
2
95
0
89
51
2
0
46
1.12
12520--12551
14
2.2
15
94
5
57
9
15
43
31
1.78
12796--12837
22
1.9
22
85
0
57
19
11
19
50
1.78
13011--13119
57
1.9
58
84
5
150
13
11
17
56
1.66
13057--13124
34
2.0
35
91
2
111
11
13
17
57
1.65
15209--15288
34
2.4
34
100
0
160
38
12
20
28
1.89
15279--15419
64
2.2
63
83
7
169
36
17
19
26
1.94
16103--16166
30
2.1
30
85
0
83
18
18
28
34
1.95
17634--17663
15
2.0
15
93
0
51
46
3
0
50
1.18
21051--21101
24
2.2
25
89
10
81
13
7
7
70
1.32
33306--33360
4
14.2
4
92
7
96
0
49
0
50
1.00
37314--37349
19
1.9
19
88
5
56
55
0
2
41
1.14
42127--42222
47
2.0
47
87
0
138
44
7
11
36
1.68
45859--45911
24
2.2
24
96
0
97
33
3
22
39
1.72
45859--45929
8
8.9
8
81
6
81
32
5
23
38
1.78
46052--46492
83
5.4
83
84
1
503
33
17
19
28
1.95
46058--46495
164
2.7
164
82
4
499
34
18
19
28
1.95
47395--47446
26
2.0
27
88
3
79
57
21
1
19
1.50
47494--47567
31
2.3
32
93
2
123
54
20
6
18
1.66
48352--48401
24
2.1
24
84
0
64
16
44
4
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48373--48444
9
8.3
9
72
9
51
18
41
2
37
1.65
48365--48442
36
2.1
38
88
7
115
17
39
3
38
1.68
49574--49630
2
28.5
2
100
0
114
49
0
0
50
1.00
50431--50468
14
2.6
14
91
4
58
60
5
0
34
1.19
50821--50862
21
2.0
21
86
9
59
26
4
45
23
1.73
55208--55254
21
2.2
21
84
0
67
19
27
17
36
1.93
55250--55343
20
4.7
20
81
2
107
38
18
20
23
1.93
55898--55976
20
3.9
21
81
5
76
51
17
18
11
1.75
55975--56019
19
2.4
19
88
0
63
48
26
13
11
1.75
56029--56072
20
2.2
20
96
4
81
15
22
22
38
1.92
59287--59319
13
2.4
14
85
5
50
33
0
21
45
1.52
59427--59477
14
3.1
17
72
21
54
45
17
23
13
1.84
59427--59506
33
2.4
33
93
0
133
46
21
21
11
1.82
59427--59485
19
3.4
19
73
22
74
45
18
22
13
1.84
59516--59606
33
2.8
33
91
4
143
12
25
18
43
1.84
59549--59643
18
5.4
18
74
15
83
15
22
20
42
1.89

Tables:   1

The End!