genome.fa.s3539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003539.1 Hibiscus syriacus cultivar Beakdansim tig00007467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76220

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2342--2366	12	2.1	12	100	0	50	40	8	44	8	1.63
7392--7882	164	3.0	163	86	4	631	24	13	20	41	1.89
9984--10028	6	7.5	6	92	0	63	11	31	55	2	1.47
23346--23384	17	2.2	17	86	4	51	28	20	10	41	1.85
25959--25986	14	2.0	14	100	0	56	21	42	28	7	1.79
26093--26147	20	2.8	20	88	0	83	12	27	32	27	1.93
26134--26171	14	2.7	14	100	0	76	7	28	42	21	1.81
27785--27833	16	3.1	16	75	0	53	53	0	0	46	1.00
27755--27821	20	3.2	20	71	14	55	52	1	2	43	1.25
30561--30615	20	2.8	20	83	5	67	21	29	21	27	1.99
30629--30662	16	2.2	15	94	5	59	17	44	26	11	1.83
32914--32952	20	2.1	18	86	13	53	53	7	0	38	1.30
33086--33131	23	2.0	22	83	4	56	45	2	2	50	1.26
33121--33160	17	2.3	18	91	4	64	52	0	0	47	1.00
33327--33410	24	3.9	21	71	28	61	48	0	2	48	1.14
34612--34668	29	1.9	30	83	16	75	52	15	1	29	1.53
35185--35229	20	2.5	18	80	19	58	48	11	15	24	1.77
37335--37384	18	2.8	18	81	0	64	34	26	16	24	1.95
38650--38676	14	1.9	14	100	0	54	48	22	14	14	1.81
39827--39897	20	3.5	20	96	0	133	46	11	22	19	1.81
44360--44457	29	3.3	29	84	1	115	32	3	19	44	1.66
47907--47956	14	3.6	14	82	17	61	42	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47925--47953	2	14.5	2	100	0	58	48	0	0	51	1.00
49283--49312	14	2.1	14	100	0	60	26	20	0	53	1.46
49460--49505	16	2.9	15	81	9	56	26	2	2	69	1.11
49488--49562	12	6.6	11	80	11	73	29	2	1	66	1.13
49495--49558	23	2.8	22	86	13	94	32	3	0	64	1.10
49489--49562	34	2.2	33	83	9	87	29	2	1	66	1.14
49835--49882	18	2.5	19	77	16	55	45	6	0	47	1.27
50840--50913	28	2.9	25	74	18	71	68	2	4	24	1.19
50848--50913	19	3.2	20	71	14	53	68	3	4	24	1.23
50910--50943	15	2.3	15	89	0	50	64	5	5	23	1.38
56582--56700	24	5.0	24	86	4	168	27	12	20	39	1.88
56816--56953	43	3.2	43	96	2	251	15	10	37	36	1.81
59090--59131	18	2.3	18	100	0	84	35	9	35	19	1.84
62527--62611	38	2.3	38	85	4	120	49	0	0	50	1.00
65461--65527	21	3.2	21	78	6	73	28	0	23	47	1.52
65445--65513	28	2.5	28	79	11	70	30	1	23	44	1.62
65480--65540	21	2.9	21	77	0	59	29	0	22	47	1.52
72188--72268	20	3.9	20	76	16	60	25	29	25	18	1.98
72231--72272	19	2.3	19	84	12	52	21	28	33	16	1.95
73192--73246	29	1.9	29	96	3	103	30	14	9	45	1.76
75604--75798	51	3.9	49	73	15	141	49	1	1	47	1.17
75801--75885	22	3.6	22	72	21	66	50	3	0	45	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76105--76179	34	2.1	35	87	4	107	40	14	13	32	1.85

Tables:   1

The End!