genome.fa.s354.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000354.1 Hibiscus syriacus cultivar Beakdansim tig00000650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117882

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022--1126	20	5.7	20	78	19	113	37	2	6	53	1.42
1147--1192	21	2.1	22	84	4	58	28	0	8	63	1.24
2415--2448	17	2.0	17	88	11	52	29	14	11	44	1.81
2419--2457	18	2.2	18	86	9	53	35	12	7	43	1.72
3298--3332	18	1.9	18	100	0	70	25	34	28	11	1.91
12298--12351	21	2.8	18	79	15	63	48	3	1	46	1.30
12566--12641	3	26.0	3	73	17	54	2	30	0	67	1.05
13743--13778	17	2.1	17	89	0	54	66	0	0	33	0.92
14198--14345	41	3.6	41	79	10	144	34	17	21	26	1.96
15311--15498	57	3.3	57	99	0	367	29	5	13	51	1.64
15745--15839	41	2.3	41	87	0	136	23	17	23	35	1.95
15745--15854	41	2.7	40	79	13	125	23	20	23	32	1.98
15783--15939	42	3.8	42	73	13	114	29	20	21	28	1.98
16765--16855	46	2.0	46	95	0	164	10	23	15	50	1.75
20437--20492	21	2.7	21	85	0	85	39	19	41	0	1.52
20468--20560	21	4.4	21	86	0	114	41	20	36	1	1.59
20925--21061	43	3.2	43	77	9	118	32	24	18	24	1.97
21000--21229	43	5.3	43	83	3	230	29	26	17	27	1.97
21956--21995	20	2.0	20	85	0	53	30	7	10	52	1.62
23980--24010	2	15.5	2	100	0	62	51	0	0	48	1.00
28581--28637	23	2.4	23	73	2	60	38	14	7	40	1.73
28673--28724	23	2.3	23	80	6	61	36	11	7	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31839--31909	22	3.3	22	76	2	72	22	18	15	43	1.87
34903--34954	16	3.3	16	70	24	56	32	17	11	38	1.85
34894--35146	31	8.2	31	89	0	389	33	14	11	39	1.83
35028--35111	16	5.4	16	64	25	54	33	15	11	39	1.84
35656--35817	64	2.5	64	79	4	157	27	20	20	31	1.98
38888--39047	31	5.2	31	95	0	293	32	16	13	38	1.87
39557--39718	64	2.5	64	79	2	164	27	20	20	30	1.98
50275--50304	16	1.9	15	93	6	51	13	33	10	43	1.77
52640--52674	8	4.2	8	96	3	61	74	0	2	22	0.95
53940--54040	23	4.5	23	76	14	104	20	29	0	48	1.56
54027--54123	48	2.0	48	88	4	142	34	15	16	34	1.90
55575--55717	64	2.2	65	86	3	191	30	25	22	20	1.98
61146--61208	20	2.9	21	79	9	65	15	25	34	23	1.95
65018--65057	21	1.9	21	85	10	55	35	10	2	52	1.48
81026--81069	20	2.2	20	91	0	70	36	15	20	27	1.93
81053--81119	20	3.3	20	93	0	107	28	23	19	28	1.98
81941--81994	24	2.2	24	93	0	90	20	18	20	40	1.91
84256--84290	18	1.9	18	94	0	61	54	25	2	17	1.57
84677--84731	29	1.9	28	85	3	74	47	18	0	34	1.49
84672--84733	14	4.3	14	79	6	70	46	16	0	37	1.47
86149--86241	42	2.2	42	80	3	107	22	17	39	20	1.92
86796--86843	20	2.4	20	89	6	71	18	18	27	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86992--87037	18	2.6	18	100	0	92	41	4	21	32	1.73
88735--88841	20	5.4	20	76	3	83	46	20	15	16	1.84
89216--89279	22	3.0	22	75	4	69	25	17	37	20	1.93
89444--89577	20	6.7	20	92	0	205	24	20	26	28	1.99
89561--89609	20	2.5	20	96	0	89	20	20	18	40	1.91
89444--89597	40	3.8	40	88	1	202	24	20	25	29	1.99
89444--89654	60	3.5	60	79	7	205	26	19	24	29	1.99
99674--99698	13	1.9	13	100	0	50	24	60	0	16	1.36
102674--102956	142	2.0	137	90	3	440	30	8	15	46	1.74
104843--104891	23	2.1	23	96	0	89	24	34	10	30	1.89
106019--106318	139	2.2	137	85	9	392	29	8	14	47	1.73
112051--112158	45	2.4	46	85	4	139	30	20	17	31	1.96
112361--112395	10	3.5	10	84	0	52	62	25	2	8	1.38
117783--117873	29	3.1	30	82	3	105	36	28	18	16	1.93

Tables:   1

The End!