genome.fa.s3540.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003540.1 Hibiscus syriacus cultivar Beakdansim tig00007468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84006

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4204--4265	23	2.7	23	94	0	115	32	11	22	33	1.90
4690--4746	22	2.5	22	91	2	87	38	21	5	35	1.76
4680--4746	23	3.0	23	86	2	91	40	22	4	32	1.74
4332--5372	425	2.5	427	95	3	1865	38	12	7	41	1.71
5105--5156	23	2.3	22	90	6	77	44	19	1	34	1.62
5115--5177	23	2.7	23	90	0	90	39	19	4	36	1.72
5591--5675	39	2.2	39	91	2	134	16	15	22	45	1.84
5951--5989	12	3.2	12	92	0	60	53	12	5	28	1.60
5951--5989	6	6.5	6	81	0	51	53	12	5	28	1.60
6374--6423	25	2.0	25	92	0	82	44	20	8	28	1.79
6651--6691	21	2.0	21	85	0	55	46	7	14	31	1.72
6694--6745	23	2.3	22	90	6	77	44	19	1	34	1.62
6704--6766	23	2.7	23	90	0	90	39	19	4	36	1.72
7055--7120	25	2.6	25	78	0	78	40	13	10	34	1.79
9573--10063	181	2.7	181	94	2	851	33	17	14	34	1.91
10455--10517	23	2.7	23	87	0	90	36	20	4	38	1.74
12105--12148	9	4.6	9	78	15	52	25	34	2	38	1.68
12104--12184	6	13.5	6	79	5	74	24	33	6	35	1.81
12108--12199	18	5.1	18	77	0	76	21	33	7	36	1.82
12127--12196	36	1.9	36	94	0	122	21	34	10	34	1.87
12142--12196	24	2.3	24	83	0	74	20	34	10	34	1.87
12108--12199	6	15.3	6	79	0	67	21	33	7	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13666--14638	200	4.9	200	97	0	1842	31	16	14	37	1.89
13666--14638	399	2.4	399	97	0	1840	31	16	14	37	1.89
14757--14805	19	2.6	19	93	0	80	57	10	2	30	1.43
16600--16665	33	2.0	33	90	0	105	22	48	0	28	1.51
16699--16740	21	2.0	21	90	0	66	16	30	11	40	1.85
16883--16918	18	2.1	17	89	5	54	11	50	5	33	1.61
18773--18825	24	2.2	24	83	6	63	26	7	13	52	1.66
18965--19007	20	2.3	18	85	14	61	20	16	11	51	1.75
18970--19016	20	2.4	19	82	10	67	19	17	10	53	1.72
19210--19248	21	1.9	20	89	5	60	23	17	15	43	1.87
19835--19859	11	2.3	11	100	0	50	36	24	8	32	1.84
20155--20216	32	1.9	32	90	0	97	46	1	4	46	1.33
24199--24265	32	2.1	32	100	0	134	46	11	7	34	1.69
24619--24672	21	2.6	21	93	0	90	29	27	22	20	1.98
24681--24726	21	2.2	21	96	0	83	26	23	26	23	2.00
25235--25313	19	3.9	19	71	12	68	35	20	20	24	1.96
25262--25336	23	3.4	23	72	20	88	36	17	21	25	1.95
25230--25342	42	2.7	42	89	4	167	37	18	19	24	1.94
25276--25345	21	3.3	21	74	18	74	34	21	20	24	1.97
25415--25479	21	3.1	21	68	16	62	21	15	23	40	1.91
25405--25474	23	3.2	23	66	15	67	21	15	24	38	1.92
25564--25588	6	4.2	6	100	0	50	36	48	16	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26102--26135	5	6.4	5	96	3	50	0	20	52	26	1.46
26105--26146	6	7.5	6	91	2	54	2	16	52	28	1.56
26260--26371	21	5.3	20	74	18	86	34	25	18	21	1.96
26270--26336	19	3.3	19	76	15	80	34	26	17	20	1.96
26235--26371	42	3.3	42	94	2	231	36	23	18	21	1.95
26341--26396	21	2.8	20	78	10	60	37	19	19	23	1.94
26445--26495	19	2.7	19	96	0	93	23	21	25	29	1.99
31321--31715	196	2.0	196	97	0	745	27	19	17	35	1.94
33381--33648	132	2.0	135	94	2	479	26	16	9	47	1.76
38293--38502	64	3.3	64	82	6	212	35	20	17	27	1.95
39254--39479	103	2.2	103	94	1	391	26	13	23	36	1.92
39488--39550	23	2.7	23	87	0	72	20	26	25	26	1.99
44272--44492	64	3.5	63	81	6	248	33	19	19	28	1.96
45244--45469	103	2.2	103	91	1	364	26	13	22	36	1.92
45478--45540	23	2.7	23	92	0	99	19	28	26	25	1.98
51712--51748	17	2.1	18	90	5	58	29	10	8	51	1.65
52948--53012	24	2.7	25	80	17	75	27	1	3	67	1.14
52950--53004	23	2.4	23	81	18	71	25	1	3	69	1.15
54418--54442	7	3.6	7	100	0	50	68	0	0	32	0.90
56129--56173	17	2.6	17	80	16	56	37	4	13	44	1.64
67232--67299	18	3.8	18	80	9	86	36	8	11	42	1.73
67232--67299	35	1.9	35	88	5	102	36	8	11	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68270--68330	17	3.5	17	78	13	70	39	11	8	40	1.71
68263--68330	35	1.9	35	88	5	102	38	11	8	41	1.73
70969--71276	44	7.1	44	94	1	480	31	23	27	17	1.97
74041--74098	18	3.2	17	83	9	71	13	18	46	20	1.83
76037--76344	44	7.1	44	96	1	507	30	24	27	17	1.97
79130--79194	18	3.6	18	97	0	121	12	18	50	18	1.77

Tables:   1

The End!