Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003541.1 Hibiscus syriacus cultivar Beakdansim tig00007469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85601

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
812--855
22
2.0
22
86
4
61
36
22
13
27
1.92
1535--1624
20
4.5
20
87
0
99
21
16
25
36
1.94
1918--1943
10
2.6
10
100
0
52
46
0
0
53
1.00
4540--4577
4
9.8
4
83
16
53
71
0
2
26
1.00
4540--4577
15
2.5
15
80
20
51
71
0
2
26
1.00
4540--4577
19
2.0
19
90
10
60
71
0
2
26
1.00
23826--24000
51
3.4
51
78
4
217
36
5
24
34
1.77
23859--24036
52
3.4
52
79
4
225
37
6
22
33
1.81
23826--24046
103
2.1
103
96
0
406
34
5
24
34
1.80
35412--35464
25
2.1
25
89
6
81
60
15
11
13
1.59
37417--37460
3
15.0
3
95
4
81
31
0
0
68
0.90
38397--38437
21
2.0
21
90
0
64
63
0
2
34
1.08
41858--41922
28
2.3
29
94
2
114
38
12
6
43
1.67
42979--43116
32
4.3
32
81
5
154
31
26
23
18
1.98
55790--55849
29
2.0
31
87
6
88
55
10
10
25
1.64
57659--57702
22
1.9
24
90
9
74
29
11
2
56
1.46
58306--58418
59
1.9
60
87
3
165
34
11
15
38
1.84
62815--63027
87
2.4
90
87
7
301
40
7
13
38
1.72
78219--78263
21
2.1
21
87
0
63
48
4
15
31
1.65
78789--78837
4
12.2
4
100
0
98
24
51
24
0
1.49
79744--79784
18
2.3
18
91
0
64
34
9
26
29
1.88
79933--80005
36
2.0
36
84
5
94
50
4
1
43
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81045--81072
14
2.0
14
100
0
56
50
7
0
42
1.30

Tables:   1

The End!