genome.fa.s3542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003542.1 Hibiscus syriacus cultivar Beakdansim tig00007470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179575

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2626--2655	15	2.0	15	93	0	51	13	0	30	56	1.37
3939--4021	29	2.8	29	92	1	139	40	12	14	32	1.83
8801--8841	21	2.0	21	85	0	55	51	2	2	43	1.28
8871--8903	14	2.4	14	100	0	66	42	0	0	57	0.98
9478--9514	18	2.1	18	89	0	56	54	0	5	40	1.24
12744--12870	51	2.5	51	82	6	168	16	34	31	17	1.92
12981--13021	10	4.1	10	84	12	57	31	29	0	39	1.57
13145--13366	111	2.0	111	90	3	349	35	8	9	46	1.67
14866--14905	18	2.2	18	95	0	71	25	32	20	22	1.98
15247--15311	3	21.7	3	83	0	67	36	24	30	7	1.84
15247--15305	27	2.2	27	100	0	118	37	25	30	6	1.82
19052--19174	49	2.5	51	89	5	189	27	22	25	24	2.00
19186--19311	51	2.5	51	85	1	164	18	30	34	15	1.92
22124--22150	14	1.9	14	100	0	54	55	0	44	0	0.99
31949--31988	21	1.9	21	90	10	64	55	0	7	37	1.29
35611--35655	21	2.1	21	87	0	63	31	28	24	15	1.96
37345--37411	22	3.0	22	95	2	116	19	26	28	25	1.99
40540--40584	21	2.1	21	87	0	63	31	28	24	15	1.96
42278--42344	22	3.0	22	95	2	116	19	26	28	25	1.99
43875--43956	23	3.7	22	75	12	69	29	28	23	19	1.98
45184--45245	22	3.0	22	79	18	87	29	27	19	24	1.98
59830--59886	21	2.7	21	94	0	96	24	29	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61032--61057	12	2.2	12	100	0	52	50	15	0	34	1.45
63329--63368	2	20.0	2	94	0	62	45	0	5	50	1.23
63600--63653	27	2.0	27	82	7	65	48	1	0	50	1.11
63596--63661	22	3.0	22	79	18	68	50	3	0	46	1.16
63920--64048	68	1.9	68	91	0	213	53	3	10	32	1.53
64032--64058	3	9.0	3	100	0	54	66	0	0	33	0.92
69888--69912	2	12.5	2	100	0	50	52	0	0	48	1.00
71440--71831	186	2.1	186	93	1	662	42	2	9	46	1.48
74157--74184	12	2.3	12	100	0	56	50	0	0	50	1.00
78295--78381	35	2.5	34	80	12	97	54	10	8	27	1.62
80679--80719	18	2.3	18	91	4	66	63	2	4	29	1.28
80761--80791	10	3.1	10	95	0	53	35	0	32	32	1.58
82754--82803	26	1.9	26	91	0	82	6	26	0	68	1.13
82754--82816	26	2.5	25	76	20	69	7	26	0	65	1.20
85752--85787	17	2.1	17	100	0	72	0	13	22	63	1.29
87096--87166	35	2.0	35	86	0	97	43	21	0	35	1.53
87717--88064	123	2.9	116	80	9	385	38	6	7	47	1.57
88785--88812	13	2.2	13	100	0	56	35	0	14	50	1.43
91180--91226	25	2.0	24	87	8	69	55	14	8	21	1.66
92719--92764	20	2.3	20	85	3	58	39	28	0	32	1.57
99515--99552	3	12.7	3	100	0	76	68	31	0	0	0.90
101659--101707	25	2.0	25	95	0	89	32	12	40	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105268--105292	13	1.9	13	100	0	50	56	0	0	44	0.99
105266--105312	24	2.0	24	86	0	67	48	2	2	46	1.25
105263--105346	24	3.5	24	73	12	66	44	8	1	46	1.41
105292--105421	24	5.5	24	70	23	78	43	9	3	44	1.51
105402--105460	26	2.3	26	85	5	84	44	15	1	38	1.56
105413--105443	16	1.9	16	93	0	53	38	16	3	41	1.64
105360--105408	14	3.7	14	76	13	50	48	6	4	40	1.47
107094--107275	84	2.2	84	89	0	274	14	14	13	56	1.67
109899--109962	30	2.1	30	91	0	101	28	21	17	32	1.96
114997--115049	18	2.9	18	74	0	61	37	28	15	18	1.91
120050--120082	16	2.0	17	88	5	50	42	36	3	18	1.66
127138--127202	29	2.3	29	83	2	78	40	9	12	38	1.75
127154--127245	31	3.0	31	88	3	134	36	16	9	36	1.82
133562--133728	86	1.9	86	100	0	334	53	13	7	26	1.65
136907--136951	15	3.0	15	86	0	63	20	31	11	37	1.87
163891--163954	33	1.9	33	96	0	119	21	9	26	42	1.83
167339--167379	21	2.0	21	95	0	73	29	19	14	36	1.92
167344--167387	21	2.1	21	86	0	61	36	20	11	31	1.88
168350--168404	21	2.6	21	94	0	92	40	12	21	25	1.89
175996--176076	37	2.2	38	80	13	96	50	3	1	44	1.27

Tables:   1

The End!