Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003543.1 Hibiscus syriacus cultivar Beakdansim tig00007474_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69864

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6461--6490
15
2.0
15
100
0
60
26
26
6
40
1.81
9157--9186
15
2.0
15
100
0
60
26
26
6
40
1.81
13276--13325
23
2.1
24
85
3
66
24
20
34
22
1.97
19479--19526
24
2.0
24
83
0
60
45
6
2
45
1.40
21651--21693
20
2.2
20
95
0
77
34
23
0
41
1.55
22797--22826
16
1.9
15
93
6
51
40
13
0
46
1.43
26256--26298
21
2.0
21
100
0
86
20
32
9
37
1.85
32549--32664
46
2.5
45
78
13
121
35
20
12
31
1.91
32462--32716
134
1.9
133
85
4
352
34
16
15
33
1.91
33590--33615
12
2.2
12
100
0
52
38
7
15
38
1.76
33739--33787
8
6.5
8
79
11
50
16
4
0
79
0.88
33738--33781
14
3.0
14
80
6
52
15
6
0
77
0.97
33741--33800
17
3.6
16
78
13
59
16
6
0
76
0.99
43234--43310
34
2.3
34
88
6
120
31
9
28
31
1.88
45813--45851
19
2.1
18
95
4
69
10
0
7
82
0.86
45927--45955
3
10.0
3
92
7
51
31
0
0
68
0.89
45964--46028
31
2.2
29
86
5
85
15
6
0
78
0.94
46111--46249
18
7.7
17
69
26
67
15
9
1
73
1.16
45996--46264
9
26.1
10
65
24
57
16
8
2
72
1.19
46120--46222
31
3.4
31
76
12
83
14
10
1
72
1.19
49817--49897
33
2.7
30
83
12
96
44
0
3
51
1.19
49797--49967
28
5.8
29
70
14
82
46
0
4
49
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49797--49967
92
1.9
87
82
5
207
46
0
4
49
1.20
49936--49980
23
2.0
23
90
0
72
44
0
2
53
1.13
49937--49987
23
2.2
23
85
0
66
47
0
1
50
1.12
49960--50024
24
2.7
26
79
11
68
50
0
1
47
1.10
50157--50201
22
2.0
23
86
4
65
53
0
2
44
1.13
50100--50272
52
3.3
52
74
16
121
49
0
2
47
1.18
55736--55774
16
2.4
16
91
0
60
23
25
15
35
1.94
55976--56002
13
2.1
13
100
0
54
55
0
0
44
0.99
55976--56018
13
3.1
14
86
6
52
55
0
2
41
1.12
56058--56111
23
2.3
24
93
3
92
42
1
9
46
1.46
56361--56402
11
3.7
11
84
6
57
47
4
7
40
1.52
56952--57027
13
5.9
14
69
18
67
26
9
15
48
1.75
56954--57031
25
3.1
25
94
0
129
25
10
15
48
1.76
57719--57782
29
2.3
28
84
10
78
54
0
1
43
1.09
57690--57743
24
2.2
24
78
15
58
51
1
0
46
1.11
57720--57798
6
14.2
6
73
21
66
51
1
1
45
1.17
57716--57777
15
4.2
15
80
12
74
53
0
1
45
1.10
57724--57803
37
2.2
37
80
14
94
52
1
2
43
1.22
57720--57804
27
3.1
27
83
13
77
51
1
2
44
1.21
57809--57872
31
2.1
30
82
5
76
50
4
4
40
1.44
57982--58082
21
5.0
19
77
12
69
45
8
6
38
1.62
58011--58121
21
5.3
20
77
18
111
45
7
7
39
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57995--58157
63
2.6
63
93
0
274
45
7
6
40
1.58
57857--58142
145
2.0
144
80
8
321
47
6
6
40
1.54
58218--58249
15
2.1
15
94
0
55
40
3
6
50
1.43
58575--58612
7
5.4
7
87
0
58
15
0
42
42
1.47
58576--58621
21
2.2
21
92
0
74
21
0
36
41
1.54
58702--58860
2
83.5
2
66
16
70
47
5
1
45
1.34
58778--58914
62
2.2
63
93
5
233
45
5
1
46
1.36
58896--58975
13
5.8
13
72
8
61
40
7
7
45
1.61
58959--59017
18
3.4
17
73
17
57
45
1
6
45
1.40
58994--59041
17
2.9
16
82
14
53
45
2
2
50
1.25
61438--61494
22
2.6
22
100
0
114
45
0
5
49
1.24
62671--62720
18
2.6
19
84
6
66
30
32
12
26
1.92
62671--62721
19
2.8
17
82
14
57
29
31
13
25
1.94
62755--62822
21
3.2
21
64
15
59
35
23
20
20
1.96
65641--65674
17
1.9
17
88
5
50
23
2
0
73
0.97
68672--68785
57
2.0
56
93
3
194
32
21
14
32
1.92

Tables:   1

The End!