Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003546.1 Hibiscus syriacus cultivar Beakdansim tig00007478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106515

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3936--4000
2
32.5
2
96
0
121
49
1
0
49
1.10
6387--6866
241
2.0
239
96
2
890
33
21
18
26
1.96
10691--10717
2
13.5
2
100
0
54
51
0
0
48
1.00
11631--11692
28
2.3
27
84
10
83
35
0
8
56
1.29
26271--26304
16
2.1
17
88
5
52
47
0
0
52
1.00
26591--26634
16
2.9
15
80
12
54
45
2
2
50
1.27
32837--32906
21
3.2
21
72
9
68
44
5
20
30
1.74
33437--33467
2
15.5
2
100
0
62
0
0
48
51
1.00
38702--38732
6
5.2
6
100
0
62
32
35
0
32
1.58
46464--46514
20
2.5
20
87
6
68
35
27
5
31
1.81
54755--54787
15
2.2
15
100
0
66
0
18
6
75
1.00
54746--54785
21
1.9
21
90
10
64
0
20
5
75
0.99
55273--55308
11
3.2
11
92
4
54
36
0
2
61
1.11
55304--55365
3
20.7
3
96
0
115
64
0
1
33
1.03
55685--56237
113
4.9
112
91
2
849
29
18
13
38
1.90
56933--57657
83
8.7
83
96
0
1283
35
21
13
28
1.92
58789--58848
1
60.0
1
79
0
66
0
10
0
90
0.47
58788--58848
11
5.8
11
90
9
83
0
11
0
88
0.51
58789--58860
24
3.0
24
87
6
101
0
13
0
86
0.58
62375--62415
16
2.5
17
84
11
50
78
0
2
19
0.87
71105--71155
15
3.4
15
94
5
86
0
19
3
76
0.94
71108--71155
9
4.6
11
75
21
50
0
18
4
77
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71099--71147
24
2.0
24
84
7
64
0
22
2
75
0.90
71099--71155
20
2.8
19
82
12
62
0
21
3
75
0.95
71641--71676
11
3.2
11
92
4
54
36
0
2
61
1.11
71672--71742
3
23.7
3
100
0
142
66
0
0
33
0.92
74333--74497
35
4.7
35
86
3
215
23
24
17
35
1.95
74333--74506
71
2.5
70
85
2
215
21
24
17
36
1.94
77965--78007
19
2.3
19
95
0
77
16
23
25
34
1.95
78582--78618
18
2.1
18
100
0
74
29
5
27
37
1.79
78799--78883
31
2.7
31
78
3
91
14
27
28
30
1.95
97031--97112
13
6.3
13
79
12
80
17
43
20
18
1.88
97085--97133
8
6.1
8
84
15
66
14
34
26
24
1.94
99945--100065
63
2.0
63
81
6
149
17
28
29
24
1.97
104097--104146
23
2.2
23
100
0
100
44
18
12
26
1.84

Tables:   1

The End!