genome.fa.s3547.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003547.1 Hibiscus syriacus cultivar Beakdansim tig00007479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114764

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9082--9108	12	2.2	12	100	0	54	55	7	11	25	1.61
20396--20435	17	2.4	17	91	0	62	32	12	12	42	1.80
21965--22022	27	2.1	27	84	9	73	75	3	5	15	1.11
26609--26637	14	2.1	14	100	0	58	44	13	13	27	1.82
28322--28380	30	2.0	30	93	0	100	35	22	30	11	1.90
35580--35612	17	1.9	17	88	11	50	66	0	0	33	0.92
35632--35664	10	3.3	10	100	0	66	60	0	0	39	0.97
46106--46175	2	35.0	2	100	0	140	50	0	0	50	1.00
50707--50772	34	1.9	34	93	0	114	43	12	10	33	1.76
50707--50828	34	3.7	34	71	12	92	43	10	13	32	1.78
51097--51164	23	2.9	23	76	24	63	20	5	4	69	1.28
51236--51365	9	13.4	9	67	22	50	17	6	0	75	1.05
51230--51290	30	2.0	30	84	12	79	24	3	0	72	1.00
51453--51482	15	2.0	15	100	0	60	20	20	0	60	1.37
54476--54556	8	9.8	8	74	12	56	77	6	14	1	1.02
54478--54547	14	4.9	14	76	10	54	77	7	15	0	0.98
54475--54554	20	3.6	21	79	12	72	77	7	13	1	1.04
55611--55646	18	2.0	18	88	0	54	19	8	30	41	1.81
56075--56372	36	8.5	35	74	12	191	26	19	14	39	1.90
56131--56435	138	2.2	137	86	1	430	27	20	12	39	1.89
56330--56487	67	2.4	67	85	5	196	32	21	8	37	1.83
56321--56487	65	2.5	65	83	4	192	31	21	8	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56974--57272	109	2.8	109	85	5	378	32	24	20	22	1.98
57006--57428	106	4.0	104	81	7	437	32	24	20	22	1.98
57006--57428	206	2.0	212	82	5	511	32	24	20	22	1.98
58243--58367	34	3.8	34	73	19	120	42	10	15	32	1.80
58634--58695	23	2.8	22	75	20	58	20	6	4	67	1.32
58649--58694	24	2.0	23	83	12	58	19	6	4	69	1.28
58770--58891	10	12.4	9	67	22	50	18	6	0	75	1.01
58762--58847	30	2.9	30	83	11	99	23	4	0	72	1.04
58828--58879	21	2.5	21	96	0	95	7	11	0	80	0.89
58970--59007	15	2.5	15	95	0	67	21	15	0	63	1.31
64429--64502	29	2.6	27	77	16	69	14	16	0	68	1.20
66458--66488	2	15.5	2	100	0	62	51	0	0	48	1.00
66806--66836	15	2.1	15	100	0	62	38	0	32	29	1.57
71914--71938	12	2.1	12	100	0	50	40	8	36	16	1.77
71996--72079	33	2.5	33	92	3	134	8	41	23	26	1.82
72043--72102	23	2.6	23	83	0	84	11	36	26	25	1.90
72085--72199	14	7.4	14	71	22	70	10	29	35	24	1.89
72090--72171	10	7.4	11	72	22	57	10	29	36	23	1.89
72093--72183	34	2.7	34	100	0	182	10	29	36	23	1.89
72107--72171	20	3.5	20	72	23	79	12	29	35	23	1.91
76842--76873	2	16.0	2	100	0	64	50	0	0	50	1.00
78203--78256	22	2.5	21	82	11	65	27	0	1	70	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80352--80489	61	2.3	60	79	6	154	35	18	15	30	1.92
80753--80813	21	2.9	21	90	0	95	37	27	6	27	1.82
80886--80944	21	2.8	21	76	0	55	33	16	20	28	1.95
82104--82241	5	28.8	5	72	19	91	36	0	4	58	1.23
82109--82197	2	46.5	2	68	24	50	38	0	5	56	1.23
82116--82211	38	2.7	34	74	14	95	37	0	6	56	1.25
82105--82241	7	18.9	7	69	23	63	36	0	4	58	1.23
83287--83339	23	2.3	21	79	17	61	20	15	1	62	1.42
91203--91264	11	5.7	11	79	9	74	16	1	22	59	1.45
91203--91264	21	2.9	22	83	7	74	16	1	22	59	1.45
91203--91268	32	2.1	32	94	5	116	15	3	22	59	1.50
93024--93052	14	2.1	14	100	0	58	20	0	13	65	1.26
95400--95425	13	2.0	13	100	0	52	38	15	23	23	1.92
96610--96668	25	2.4	25	78	13	70	47	13	15	23	1.81
99721--99767	21	2.1	24	88	11	73	53	0	0	46	1.00
101554--101606	24	2.2	24	100	0	106	32	16	0	50	1.46
109017--109060	23	1.9	23	90	0	70	50	13	6	29	1.68

Tables:   1

The End!